Protein Info for Shew_1882 in Shewanella loihica PV-4

Annotation: metal dependent phosphohydrolase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 428 transmembrane" amino acids 29 to 47 (19 residues), see Phobius details amino acids 53 to 72 (20 residues), see Phobius details amino acids 79 to 100 (22 residues), see Phobius details amino acids 106 to 122 (17 residues), see Phobius details amino acids 129 to 147 (19 residues), see Phobius details amino acids 160 to 184 (25 residues), see Phobius details PF20969: MASE11" amino acids 21 to 187 (167 residues), 181.9 bits, see alignment E=1.4e-57 PF01966: HD" amino acids 218 to 352 (135 residues), 55.2 bits, see alignment E=1.3e-18 PF13487: HD_5" amino acids 242 to 384 (143 residues), 110.2 bits, see alignment E=1.5e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_1882)

Predicted SEED Role

"Response regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QE50 at UniProt or InterPro

Protein Sequence (428 amino acids)

>Shew_1882 metal dependent phosphohydrolase (RefSeq) (Shewanella loihica PV-4)
MDAPNFSQTAAHELHDTLPIWRELIFKRLFGLLAILCVPVYITSVYLCIQMGLVGMAAFD
TLAYLLLLYILLARGLRQTLRYCIGCLMFFAIGVAFLITIGPTGAGFFWLFIFPPLTSIL
IGKRASLCAQLLNAAALLVIGLVYHTQGFQWPETQGYSSFIWFVVAINFIVTNAIVTQSA
AFLLGKLTQSLRSTIASRRATVMGLAKLAEYRDNETGAHLIRMQHYAKMLATQRQTDIDA
PAELTDDFIQEITLSSILHDIGKVGIADAILLKPGRLTEEEFEQIKAHPVIGAQVLASLL
SYAPECPYIKMGRDIAGGHHEWWDGSGYPAGLQGEAIPLSARIVALVDVYDALTSPRCYK
RPFSHQEALELIHQDKGTHFDPKLVESFIAINHRFELLSKASLFERPSKQPLRGQVAVAS
ESELETSQ