Protein Info for Shew_1698 in Shewanella loihica PV-4

Annotation: binding-protein-dependent transport systems inner membrane component (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 752 transmembrane" amino acids 33 to 55 (23 residues), see Phobius details amino acids 456 to 479 (24 residues), see Phobius details amino acids 491 to 514 (24 residues), see Phobius details amino acids 519 to 540 (22 residues), see Phobius details amino acids 557 to 583 (27 residues), see Phobius details amino acids 603 to 626 (24 residues), see Phobius details amino acids 648 to 671 (24 residues), see Phobius details amino acids 717 to 738 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 469 to 746 (278 residues), 32.2 bits, see alignment E=8.8e-12

Best Hits

KEGG orthology group: K02037, phosphate transport system permease protein (inferred from 100% identity to slo:Shew_1698)

Predicted SEED Role

"Phosphate transport system permease protein PstC (TC 3.A.1.7.1)" in subsystem High affinity phosphate transporter and control of PHO regulon or Phosphate metabolism (TC 3.A.1.7.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QDL7 at UniProt or InterPro

Protein Sequence (752 amino acids)

>Shew_1698 binding-protein-dependent transport systems inner membrane component (RefSeq) (Shewanella loihica PV-4)
METQVIQPGSTATDLLMGKGSSKRAFKDKLTQIGVTMGGTMVFVALLLIFFYLLYVVKPI
FDGADVTPVINVELQDAKSPALMVGSDEQNEILYRVSQDGGVSFYSALSASLVKQEQINV
PQDAEIVSSVAGVPSEQRFAFGLSNGQVIIGGVNFAVTYPNNKRLITPSLRYPLGASPLQ
VSESGTPLYQLAFASASDKLSFAYHDANGRWFLTRHNGEENMMTEEVEWEATTSQIQEAP
AQVDQQLMTPDQRQLLLRSGNRLYVYDIRYVDEIALSQVIELERAKTKVTDVALLAGASS
LLVSYDNGQIFQYFQVNGDKGRQYQEIRDFKNKAGVKRIAGEFYRKSFATVSESGELDLL
YTTSQRKLFTETFDLAHATQMGFSPRANALVVEAGNKLHLFAVENSHPEVSWSAMWSKVW
YEGYPEPQYVWQSTSGSDDFEAKLSLMPLAFGTMKAALYAMLFATPLAIAGAVYTAYFMS
PKVRAVVKPTIEIMEALPTVILGFLAGLWLAPLIEDHLPGIIMLLVLLPISILLTALGWY
KLPGRWKQRLPETYQELMLIPVICFVGWFAFYISPSIEVAFFGGDTRLFITNELGITFDQ
RNALVVGIAMGFAVIPTIFSIAEDAVFSVPRHLSNGSLALGATNWQTLTRVVLLTASPGI
FSAVMMGLGRAVGETMIVLMATGNTAIMEWSVFEGMRTLAANIAVEMPESAIGSSHYRVL
FLAAFVLFIFTFLFNTIAEVVRQRLRERYSSL