Protein Info for Shew_1696 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 31 to 50 (20 residues), see Phobius details amino acids 69 to 89 (21 residues), see Phobius details amino acids 96 to 117 (22 residues), see Phobius details amino acids 124 to 141 (18 residues), see Phobius details amino acids 148 to 168 (21 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 209 to 229 (21 residues), see Phobius details amino acids 240 to 261 (22 residues), see Phobius details amino acids 267 to 288 (22 residues), see Phobius details PF00892: EamA" amino acids 2 to 140 (139 residues), 64.6 bits, see alignment E=5.3e-22 amino acids 150 to 281 (132 residues), 66.3 bits, see alignment E=1.6e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_1696)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QDL5 at UniProt or InterPro

Protein Sequence (298 amino acids)

>Shew_1696 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MANLMLLVAAAIWGLGFVAQRLGMDHLEPFAFNGLRFVIGALSLLPLIWVMQRKGRLKGV
SDKDILRRVLIGSLACGGILFIAASFQQVGLLHTTAANAGFITGLYIVLVPVLGLLLKHS
TGTNTWVGCAVAAVGLYFLSVGDDFSISYGDGLQLIGAIFWAMHILAVDHFTNRVAPVVL
ACGQFLVCALASFGVSLVLETTTVAGVQAAWAALAYSGLVSVGVAYTLQVLAQKHAHPAH
AAIILSLETVFAAIGGMMFLGESLSGRALFGCGLMLLGMLISQLPLRYLVKSRHEKAA