Protein Info for Shew_1685 in Shewanella loihica PV-4

Annotation: collagenase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 968 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details PF08453: Peptidase_M9_N" amino acids 148 to 326 (179 residues), 141 bits, see alignment E=5.6e-45 PF01752: Peptidase_M9" amino acids 396 to 675 (280 residues), 352.4 bits, see alignment E=2.8e-109 PF04151: PPC" amino acids 762 to 819 (58 residues), 27.2 bits, see alignment 8.8e-10 amino acids 886 to 950 (65 residues), 37.7 bits, see alignment 4.7e-13

Best Hits

KEGG orthology group: K01387, microbial collagenase [EC: 3.4.24.3] (inferred from 100% identity to slo:Shew_1685)

Predicted SEED Role

"Microbial collagenase, secreted (EC 3.4.24.3)" in subsystem Proline, 4-hydroxyproline uptake and utilization (EC 3.4.24.3)

Isozymes

Compare fitness of predicted isozymes for: 3.4.24.3

Use Curated BLAST to search for 3.4.24.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QDK4 at UniProt or InterPro

Protein Sequence (968 amino acids)

>Shew_1685 collagenase (RefSeq) (Shewanella loihica PV-4)
MTTNMTNKTLGGARRFTPTALALACSLLATPLVLHAQDVQPQGMPAKDVKGPLSIKAAPS
TKAAPPTKAAPAQKVKPSADKAAASSRFDTSARKPIGARDAEQGEGVRPEKRDSKLEKGS
KGQSALPGMKGNQGATGPAAEADACNGYSQFDSLSGQALYDFVRQAEFSCISELYSHNDA
TAVKVYQADNVVAVANLAKATAASYDSSTGGELFNLFYFLRGAFYIEYYNDDLSYGDSRA
SDAMRELLLEYAKNPAFNSLSDMQGNTLQEYFIAWDSSYNYYDSVAVITDYLNQFSEQHL
ASWYHRSALTKALTTLYRGNWDEKYTKASMEYDALRAALLKVATSDYIINSEYAFESTDA
FHEFGRFYEYQAYWKLPDSLKTALNGGVQQYMAKFNRLSKQWVDAAGYLDYYNPGQCDSF
GICGWEDEVEASVLAIHYSCSDTIKIRAQQLTDQELQASCELMGEEEGLFHQILATGGEP
VADDYNEDLQVNIFDSYDDYDVYAGIIFGINTDNGGMYLEGTPSDPDNQARFIAHEATWT
DDILVWNLRHEYVHYLDGRFNLYGAFNYFDVDTGKSVWWAEGLAEYISHQNRYDEAIDIG
RSQEFSLSEILSNTYDSGTDRVYRWGYLAVRFLFEQHRSDVDALLVHARAGDTSAWLSYI
DNTIGTNYDAEWNSWLLTVTSNDTLLDGGIVTPVDSDGDGVIDSEDAFPNDPTEWADENG
NGIGDNADAANGGGQTGNCGAATISDGNITQEQAECVAGTGVNYYYTYVEQDNTQLYIST
TGGEGDLDIYFNQQTWASPSDYEVKSQNSGNEELISVVANRGWVYLSTVAVTPFEGVSLK
ISQSADTTPDNGSPQVADACLSQSPYSYGGVEFGQAVCVDDGHSSYYFYVPANTAAIEIN
TAHGSGDLNLYANATTWASPTAYQFKSENVGNSEQIRVVSPAEGWFYVSADGAPSSSGAS
LLVTLASN