Protein Info for Shew_1616 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 284 transmembrane" amino acids 36 to 55 (20 residues), see Phobius details amino acids 92 to 115 (24 residues), see Phobius details amino acids 136 to 163 (28 residues), see Phobius details amino acids 170 to 198 (29 residues), see Phobius details amino acids 210 to 230 (21 residues), see Phobius details amino acids 255 to 275 (21 residues), see Phobius details PF12679: ABC2_membrane_2" amino acids 97 to 250 (154 residues), 35.3 bits, see alignment E=3.9e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_1616)

Predicted SEED Role

"Nitrous oxide reductase maturation transmembrane protein NosY" in subsystem Denitrification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QDD5 at UniProt or InterPro

Protein Sequence (284 amino acids)

>Shew_1616 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MIKESSLDNLTPRSSWNAALVLARFELKKILFSTRGMIGLATFALTWCLILWYPIRQASF
YLFSPDFKQLLEGVFGAANVGELLSWDVAEMAILWVAALYLFPIFSLFVGADQFASDKAR
GSFRFLTLRVSRDTLFFGRVTGYLLIQAILLILTLVATLLLVAYRDTALVWAAMGSGVLV
FINIMIVLAPFTAMMAILSLHANSARQASIYAVLFLAGSTIANGIISYYLPGLSNILQWL
VPGAQLDMMINTKGLSSLAIAAIPLLQAGVLLLLGRSYMARIAL