Protein Info for Shew_1412 in Shewanella loihica PV-4

Annotation: tetratricopeptide TPR_2 (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 PF14307: Glyco_tran_WbsX" amino acids 19 to 354 (336 residues), 323.4 bits, see alignment E=1.2e-100

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_1412)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QCT3 at UniProt or InterPro

Protein Sequence (372 amino acids)

>Shew_1412 tetratricopeptide TPR_2 (RefSeq) (Shewanella loihica PV-4)
MADGAEFKVYTQRFIMEKIAYYLGQYHSLEENNAFWGEGFTEWHNVAKARPLFPSHRQPV
LPGKLGFYDLRNNDTIEEQVALADSFGVTAFCHWHYWFGGKRVLYRPFDSMLKIQNSPVK
VMLGWANESWTGIWHGLSDQVIFEQPYNKIELNEHAKLLADYFRHENYLKVNGKAAFLIY
KPRKIPESKSYLQLLRQKVYENCGLDMYIIGTWGPGRLEVIHSADELGLDALVANNVGAT
FKSELSRKLYNGFWTAAKSLGLGPELRNYASTVKTLEYAHQNISGTVHSTIVTGWDNSPR
SNRRALVLTNFNENSFKYAIDIAISNEKNNENKLLFIKSWNEWAEGNTLEPRFKEDWSLG
KVLKKQIIKHDV