Protein Info for Shew_1368 in Shewanella loihica PV-4

Annotation: flagellar assembly protein FliH (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 PF02108: FliH" amino acids 123 to 249 (127 residues), 112.4 bits, see alignment E=7.1e-37

Best Hits

KEGG orthology group: K02411, flagellar assembly protein FliH (inferred from 100% identity to slo:Shew_1368)

Predicted SEED Role

"Flagellar assembly protein FliH" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QCN9 at UniProt or InterPro

Protein Sequence (339 amino acids)

>Shew_1368 flagellar assembly protein FliH (RefSeq) (Shewanella loihica PV-4)
MTMSGDKKPQEGKGVHTTQADFSHWQLPDVTPVVHEPKENMFGRIAPQKAAKAVDEPVMP
PTLEEIESIRAEAEAEGFAQGQEAGMAKGLEEGRLKGLEQGHEEGYRQGQAQGMEAGLVE
AKQTIAHFEALMQQLSMPLSLLDTEIEQALVQLSMTLAKAVIGHELKTHPEHILAALRQG
VDALPLKEQGAHLRLHPEDLAIVERLYESAQLTKNHWELEADPTLSRGECIVSNSRSRVD
MGLEHRIKAVFDKLIASEQRLEQQRLQQLAAMEKVPEHQDQNQDLDGDAAQAGLETDSQT
SDPQQTQVVDASQVAPSEQIAPDAPQETSPDEDTSKPAS