Protein Info for Shew_1311 in Shewanella loihica PV-4

Annotation: acriflavin resistance protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1023 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 335 to 354 (20 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 388 to 411 (24 residues), see Phobius details amino acids 431 to 453 (23 residues), see Phobius details amino acids 459 to 481 (23 residues), see Phobius details amino acids 524 to 542 (19 residues), see Phobius details amino acids 856 to 875 (20 residues), see Phobius details amino acids 882 to 902 (21 residues), see Phobius details amino acids 908 to 930 (23 residues), see Phobius details amino acids 957 to 976 (20 residues), see Phobius details amino acids 982 to 1003 (22 residues), see Phobius details PF00873: ACR_tran" amino acids 10 to 1008 (999 residues), 459.6 bits, see alignment E=3e-141 PF03176: MMPL" amino acids 818 to 1008 (191 residues), 22.1 bits, see alignment E=1e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_1311)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QCI2 at UniProt or InterPro

Protein Sequence (1023 amino acids)

>Shew_1311 acriflavin resistance protein (RefSeq) (Shewanella loihica PV-4)
MIKALVENGRLASLVIALLIVAGLGAITSLPRMEDPSITNRFASVVTHYPGASAERVEAL
VTEVLENQLRRLEELKLVQSTSRPGISVIQLELKDRITETDPVWSRARDLVNDAKNLLPP
AAQNALLDDQLGYANTAILGLVWQGAGEPRQDILNRYAKELQSQLRLIPGTDFVKLYGAP
TEEILVQIDAQNVNRIGLSAAAIAQILANADTKVSAGEITNDAFRALVEVSGELDSVTRI
RQVPLKVDENGQIIRLGEVASVQRQPKTPAASIALIEQAQGIMVSARMLNNTRVDLWLQQ
VHRVVEKVQGDLSSNVEIQWLFDQEGYTTTRLSDLIASLLLGFIIILVVLMLTLGLRNAV
IVSLSLPLTALFTLACMKYVGLPIHQMSVTGLVVALGIMVDNAIVIVDAIAQRRRQGLDR
LSAVGETLKHLWLPLAGSTITTMLAFTPIILMPGAAGEFVGGIAISVIFALLGSYLISHT
LIAGFAGRFGAEGDATHWYQRGVNFPIIARAFSKTLHIALKRPLLAGVVIGILPITGFIA
SGQMTEQFFPPSDRDMFQIEVHLAPQSSIENTRALVERIDAKLRATGEMQRLDWVIGGNA
PSFYYNLLQRQQGAANYAQAMIKVADFERANQLIPRLQTQLDAEFPEAQILVRKLEQGPP
FNAPVELRIYGHNLDTLREIGDEVRRILITTDHVLHTRATLSAGAPKVWFQVNEDASKMS
GLSLTDIANQIQMATTGINGGSILEQTESLPIRVRTQDLMREQQTELSQINLLSSNGVGI
PLSALASSRIDVSLGAIPRRDGQRVNTIEAYLESDVLPQQVLNQAKTRIDALTLPAGYRI
EVGGESAKRNEAVGNLLSNIVLVITLLLATVVLSFNSFRLTGIILLSAVQSAGLGLLAVY
LFNYPFGFTVIIGLLGLMGLAINAAIVILAELEDMPDRREASIDAIVQVVSSCGRHIGST
TITTIGGFLPLIIAGGGFWPPFAIAIAGGTALTTLLSLVWVPTMYQLLMTKRQAAPVPAL
QPS