Protein Info for Shew_1238 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 120 transmembrane" amino acids 6 to 30 (25 residues), see Phobius details amino acids 50 to 68 (19 residues), see Phobius details amino acids 74 to 94 (21 residues), see Phobius details amino acids 101 to 119 (19 residues), see Phobius details PF11804: DUF3325" amino acids 15 to 113 (99 residues), 85.1 bits, see alignment E=1.6e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_1238)

Predicted SEED Role

"FIG016502: iron uptake protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QCB0 at UniProt or InterPro

Protein Sequence (120 amino acids)

>Shew_1238 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MNLSIGLSLCLALCLSLCLAFIAFGALALAMFSHFKSCFKRPPTQRQQRALTLTGWASLA
LSFLALLGQYEPAYATILLFGVMSAAALMVILLLSYQAKRLPASLAVAALLALVDFSLFV