Protein Info for Shew_1158 in Shewanella loihica PV-4

Annotation: alkaline phosphatase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 502 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF00245: Alk_phosphatase" amino acids 57 to 495 (439 residues), 417.1 bits, see alignment E=8.4e-129

Best Hits

Swiss-Prot: 44% identical to PPBT_BOVIN: Alkaline phosphatase, tissue-nonspecific isozyme (ALPL) from Bos taurus

KEGG orthology group: K01077, alkaline phosphatase [EC: 3.1.3.1] (inferred from 100% identity to slo:Shew_1158)

Predicted SEED Role

"Alkaline phosphatase (EC 3.1.3.1)" in subsystem Phosphate metabolism (EC 3.1.3.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.3.1

Use Curated BLAST to search for 3.1.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QC30 at UniProt or InterPro

Protein Sequence (502 amino acids)

>Shew_1158 alkaline phosphatase (RefSeq) (Shewanella loihica PV-4)
MMKVMMIKRLAALISCSLVTMAANSAVLPSVQTDSHWYKESAQRVSDKATLETKAKAKNV
ILFVGDGMGISTLTAARIYQGQQMAGNQGGEENFLSFEKFDHTALIKTYNTNQQTPDSAG
TMTAIATGVKSKAGVISVSDQSLRGNCLSSKGNELVTLVDLANAKGLSTGVVSTARITHA
TPAATYANSPERDWESDANLPAEAVANECKDIAYQMVMRDKDNALTVALGGGRRAFIPNT
VTDGENKKGQRKDGMDLTKAWVENFDNAAYVWNSEEFDAIDVATTDHLLGLFNSSHMEYE
ADRADDVGGEPSLTEMTEKSIEMLKKNDNGYLLIVESGRIDHGHHAGNAKRALADAVELS
NAVKAAVENTNPDETLILVTADHSHVFTIAGYPKRGNPILGLVHGVDGTVSTALDGKPYT
TLGYTNGPGAIVGNRDDLSSVDTQDKDFMQQSLIPMGSETHAGEDISLHATGPGSNLVQG
VMEQNVIFHIINQAQALGGTKY