Protein Info for Shew_1121 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 177 PF04264: YceI" amino acids 11 to 173 (163 residues), 146.7 bits, see alignment E=3.6e-47

Best Hits

Swiss-Prot: 69% identical to Y3055_SHEB8: UPF0312 protein Shew185_3055 (Shew185_3055) from Shewanella baltica (strain OS185)

KEGG orthology group: None (inferred from 100% identity to slo:Shew_1121)

Predicted SEED Role

"FIG01057522: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QBZ4 at UniProt or InterPro

Protein Sequence (177 amino acids)

>Shew_1121 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MLPATANAANYVIDTQGAHASVQFKVSHLGYSFVVGRFNEFAGDFSFDSKHMADAKVNVT
INTASLDSNHAERDKHLRSEDFLNVAKHPEASFKSTSVKELGDGKFVLNGMLTLNGVTKP
VAIDAKFIGEGQDPWGGYRAGFVGQTEFALKDYDIKMDLGPASSHVTLDLVVEGIRQ