Protein Info for Shew_0946 in Shewanella loihica PV-4

Annotation: band 7 protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 595 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details PF15975: Flot" amino acids 422 to 544 (123 residues), 132.8 bits, see alignment E=3.7e-43

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_0946)

Predicted SEED Role

"Inner membrane protein YqiK"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QBG9 at UniProt or InterPro

Protein Sequence (595 amino acids)

>Shew_0946 band 7 protein (RefSeq) (Shewanella loihica PV-4)
MNEVEGIGVSLGGSFVFIAAGAVLIGILVIGMIFAKLYRRASKETAFVRTGFGGEKIIKD
GGAIVLPVLHETIAVNMNTLRIEVEKMQKDALITKDRMRVDVRADFYLRVAPSVEGISMA
AQTLGTRTTRVEEVKKLMESKFVDVLRAVAAEMTMTEMHEQRADFVQRVQNNVANDLEKN
GLELESVSLTGFDQTDLQFFNENNAFDAEGRARLAKIIEEKRKETNDIEQENRIKIEQRN
LEAEKESLEIEKAEEEARLVQQQALEFKRAEQKAEILKKQEQKSREEREAEIAKERAVET
AQIEKTKDIETREIEKRKAIEQSRIQQQRDIEVAEQDKQIAVAQKSEEESAARAKAAEAE
KLKVEKEEAVITVRQVAEANRRKEIEVIDARKEAERDAVGVTVEAEAEKRAAEDKASAIL
TEAKAAADAKKLKAEADEKVYAVEAAGKQALHEAENVLSSEQIELQKALAMLKALPEVVA
QAVKPLENIEGIKILQGYGTSGATQGNGETVLSQGGIAEQVTSAALNYRANAPIVDAMLR
ELGMVDGKHGGLNDLLKGHNMITQDMLGAGEMSDESQGAHSPLNGKTPREGDAAN