Protein Info for Shew_0864 in Shewanella loihica PV-4

Annotation: Dyp-type peroxidase family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 314 TIGR01413: Dyp-type peroxidase family" amino acids 18 to 304 (287 residues), 220.4 bits, see alignment E=1.9e-69 PF04261: Dyp_perox_N" amino acids 62 to 139 (78 residues), 52 bits, see alignment E=8.3e-18 PF20628: Dyp_perox_C" amino acids 142 to 304 (163 residues), 172.5 bits, see alignment E=6.7e-55

Best Hits

KEGG orthology group: K07223, putative iron-dependent peroxidase (inferred from 100% identity to slo:Shew_0864)

Predicted SEED Role

"Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QB88 at UniProt or InterPro

Protein Sequence (314 amino acids)

>Shew_0864 Dyp-type peroxidase family protein (RefSeq) (Shewanella loihica PV-4)
MDSLVMPREQLGVCAEGNLHSVYLMFNANDGVESQLRPCVANVAQYIYELADQYADSAFN
GFVAIGANYWDSLYPGRRPSQLKPFPAMHADNRDAPAHEYDLFVHLRCDRYDILHLVANE
VCQMFEDLVELVDEERGFQFMDTRDLTGFVDGTENPKGRHRQDVALVGDEDEYFRGGSYI
HVQKFAHNLSKWNRLPQKKQEDIIGRTKIDNIEYASEDKPLTSHIKRVNLKDADGKSMEI
LRQSMPYGSMKEQGLMFISVCRNSVHFEKMLSSMVHGDGEGNHDHLMHFTQALTGSAFFA
PSLDFMEREAEFED