Protein Info for Shew_0770 in Shewanella loihica PV-4

Annotation: tyrosine recombinase XerD (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 PF13495: Phage_int_SAM_4" amino acids 13 to 97 (85 residues), 29.9 bits, see alignment E=9.3e-11 PF02899: Phage_int_SAM_1" amino acids 14 to 96 (83 residues), 75.8 bits, see alignment E=4e-25 TIGR02225: tyrosine recombinase XerD" amino acids 16 to 302 (287 residues), 383.2 bits, see alignment E=4e-119 PF00589: Phage_integrase" amino acids 119 to 290 (172 residues), 184.5 bits, see alignment E=2.2e-58

Best Hits

Swiss-Prot: 76% identical to XERD_SHEON: Tyrosine recombinase XerD (xerD) from Shewanella oneidensis (strain MR-1)

KEGG orthology group: K04763, integrase/recombinase XerD (inferred from 100% identity to slo:Shew_0770)

Predicted SEED Role

"Tyrosine recombinase XerD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QAZ4 at UniProt or InterPro

Protein Sequence (303 amino acids)

>Shew_0770 tyrosine recombinase XerD (RefSeq) (Shewanella loihica PV-4)
MLAESNEYQTDPLIEPFLDDLWAAKGLSDHTLQAYRSDLSHFDRYLNKQGSSLLSTSQAE
VRDYLALRVEHGFAKTSSARLLSSLRRFYKYLLAKKLIEVDPMAMIKPPKLARKLPDALS
EADVDRLLSEPNREDPVEARDRAMLELLYASGLRVSELVGLTLDQMSLRQGVVRIVGKGS
KERLVPFGEQAGAEIEDYLKAARFELLKGKASDVVFPSKRGNMMTRQTFWHRIKLYAQRA
GIAVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLAQLHQAHH
PRG