Protein Info for Shew_0764 in Shewanella loihica PV-4

Annotation: radical SAM domain-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 TIGR04038: radical SAM protein, TatD family-associated" amino acids 5 to 196 (192 residues), 270.5 bits, see alignment E=4e-85 PF04055: Radical_SAM" amino acids 17 to 162 (146 residues), 46.3 bits, see alignment E=2.8e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_0764)

Predicted SEED Role

"COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QAY8 at UniProt or InterPro

Protein Sequence (200 amino acids)

>Shew_0764 radical SAM domain-containing protein (RefSeq) (Shewanella loihica PV-4)
MSQSTLVYDIRNSRYLNITGRCTLRCQFCPKHNGSKQVHEYQLDLDHQPKADELIPLLGE
VSQFDEYVFCGYGEPTLNLATLLSVAREIKRRGGRVRVNTDGLGNLFHRRNILPELAEVV
DALSISLNADTEAAYLKHCQPKLKGAYESLWDFIRMAPGYIEQVQVSAIEGLEGVDIDRC
RALVLDAKAQFKHRKLGVVG