Protein Info for Shew_0723 in Shewanella loihica PV-4
Annotation: ABC transporter-related protein (RefSeq)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 50% identical to YVRO_BACSU: Uncharacterized ABC transporter ATP-binding protein YvrO (yvrO) from Bacillus subtilis (strain 168)
KEGG orthology group: K02003, (no description) (inferred from 100% identity to slo:Shew_0723)MetaCyc: 43% identical to lipoprotein release complex - ATP binding subunit (Escherichia coli K-12 substr. MG1655)
RXN-22427
Predicted SEED Role
"ABC transporter ATP-binding protein"
MetaCyc Pathways
- lipoprotein posttranslational modification (Gram-negative bacteria) (3/7 steps found)
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A3QAU7 at UniProt or InterPro
Protein Sequence (240 amino acids)
>Shew_0723 ABC transporter-related protein (RefSeq) (Shewanella loihica PV-4) MLTMKNINKVFKTDLVETHALRDFNLEVKEGEFVAVTGPSGSGKTTFLNIAGLLEGFTNG EYHLDDVNISNLSDNKAAAIRNEKIGFIFQGFNLIPDLNLAENVEVPLRYRGFNAKERQR RVKAALEQVGLGARMKHLPSQLSGGQQQRVAIARALAGEPRFLLADEPTGNLDSLMARQV MELLEEINKAGTTIIMVTHDPELARRAQRNIQIVDGQVCDFTLYQGGQSHLVDTAEKVAS