Protein Info for Shew_0712 in Shewanella loihica PV-4

Annotation: ABC transporter-related protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 324 PF00005: ABC_tran" amino acids 51 to 200 (150 residues), 119.8 bits, see alignment E=1.4e-38 PF13304: AAA_21" amino acids 155 to 230 (76 residues), 30.4 bits, see alignment E=4.2e-11

Best Hits

KEGG orthology group: K02013, iron complex transport system ATP-binding protein [EC: 3.6.3.34] (inferred from 100% identity to slo:Shew_0712)

Predicted SEED Role

"ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.3.34

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QAT6 at UniProt or InterPro

Protein Sequence (324 amino acids)

>Shew_0712 ABC transporter-related protein (RefSeq) (Shewanella loihica PV-4)
MSAPNQPSQTESLLSLGASEGSNLSAGDGACARPALSVRDLSWRCGERAILSGVKLDLPE
GKMLGIIGPNGAGKSSLLRCLYRFLTPSSGEIQLFGQPIASLSARAFAREVAVVLQDTPQ
HFDMTTAQLVALGLTPHKAAFSMTTKADRLAVSQALETVGLKERAGQTYASLSGGEKQRA
LIARAIAQQPKLLILDEPTNHLDIRYQIQILELLKALGVTVVISIHDLNLASALCDQLLL
LDQGKAVAQGSPKQVLSEAQIARVFCVCCQVSPHPQHGNPQINYFYGYHLHNADQSAQHG
SSSGSANGLADQPFEAKEANHDER