Protein Info for Shew_0518 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 246 transmembrane" amino acids 12 to 40 (29 residues), see Phobius details amino acids 47 to 65 (19 residues), see Phobius details amino acids 77 to 96 (20 residues), see Phobius details amino acids 101 to 123 (23 residues), see Phobius details amino acids 130 to 154 (25 residues), see Phobius details amino acids 165 to 185 (21 residues), see Phobius details amino acids 191 to 210 (20 residues), see Phobius details amino acids 222 to 243 (22 residues), see Phobius details PF01925: TauE" amino acids 16 to 236 (221 residues), 79.5 bits, see alignment E=1.6e-26

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 100% identity to slo:Shew_0518)

Predicted SEED Role

"Protein of unknown function DUF81" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QA92 at UniProt or InterPro

Protein Sequence (246 amino acids)

>Shew_0518 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MPALPLDPHILALASLIVFVGALTQSLIGFGMAVVAAPLLYLIEPSLVPAPVILMGFSIA
LLTLIRERGALEFNGLQYALLGRIPGGLIGAGLLMVAPQDVLGMTIAIIVAIAVLLSLMR
LNLVVNRRSLFIAGVISGIFGNIAAIGGPPLAILLSGKDAKQFRAALSAFFIFSSTIAIV
ILGLTGLLTLHHFYCSALLLPSVLLGYLMANRLVGRIDKNKTRIMTLVLCSLSAILLAAK
SLSALL