Protein Info for Shew_0513 in Shewanella loihica PV-4

Annotation: ABC transporter-related protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 552 transmembrane" amino acids 16 to 39 (24 residues), see Phobius details amino acids 50 to 69 (20 residues), see Phobius details amino acids 129 to 149 (21 residues), see Phobius details amino acids 153 to 171 (19 residues), see Phobius details amino acids 192 to 208 (17 residues), see Phobius details PF00664: ABC_membrane" amino acids 17 to 275 (259 residues), 64.3 bits, see alignment E=1.5e-21 PF00005: ABC_tran" amino acids 344 to 492 (149 residues), 36.6 bits, see alignment E=6.9e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_0513)

Predicted SEED Role

"ABC transporter protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QA87 at UniProt or InterPro

Protein Sequence (552 amino acids)

>Shew_0513 ABC transporter-related protein (RefSeq) (Shewanella loihica PV-4)
MVKTFRLLAQNQSFNELLLTSVFINLLSLALPFTMLQIYDRILPNEAHGTATVLVIGVAI
AILLELILRYARSWLLGASAANYELHTITRVVKRLLNADYHHIENLGAGKISHGIHSIAA
MRDIYSGQAAVALMDFPFVLIFLALVAYIGGPLVFIPLIVWLIAGVRVWQLGQKLSLATK
ELSLSQDERTRLLMLVLSGLTTTKAMALESRMTYAYKKINHQRLAQQEEVDWLSAKLQEL
IQGTAQATTLCLVMIGCFEVLNGNLTTGGLAACSILAGRAVAPLSAIGSLRAKYVSAKEA
MDQVNALIATPQETFNGQTRYQQKLPLGPISFESVSAEKTSARLDNISLTIPAGCIVTVT
SNPMTHASLLLSTIGAYHQLDSGQIAIAGVPQQDHDGFEYRQSICYVPPWASLFSGSILE
NMTLFRREREASAMLIADQLGLSATLAQLPAGYQTQVGSNENQVLNKGAIKLIALVRALA
QSPSILLLDEPMVSLDADSQARLLQVLMERRGQMTVVIASYFDEVAALSDMQIALGEHGE
LAGQAQGQGGVR