Protein Info for Shew_0510 in Shewanella loihica PV-4

Annotation: putative outer membrane adhesin like proteiin (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2812 TIGR01965: VCBS repeat" amino acids 384 to 476 (93 residues), 60.5 bits, see alignment (E = 6.9e-21) amino acids 484 to 586 (103 residues), 78.6 bits, see alignment (E = 1.7e-26) amino acids 596 to 691 (96 residues), 111.7 bits, see alignment (E = 7.8e-37) amino acids 702 to 797 (96 residues), 112.4 bits, see alignment (E = 4.8e-37) amino acids 808 to 903 (96 residues), 113.2 bits, see alignment (E = 2.7e-37) amino acids 914 to 1009 (96 residues), 114.1 bits, see alignment (E = 1.4e-37) amino acids 1020 to 1115 (96 residues), 112.3 bits, see alignment (E = 5.2e-37) amino acids 1126 to 1221 (96 residues), 115.2 bits, see alignment (E = 6.4e-38) amino acids 1232 to 1327 (96 residues), 116.9 bits, see alignment (E = 1.9e-38) amino acids 1338 to 1433 (96 residues), 114.9 bits, see alignment (E = 7.9e-38) amino acids 1444 to 1538 (95 residues), 106.9 bits, see alignment (E = 2.5e-35) amino acids 1552 to 1651 (100 residues), 66.7 bits, see alignment (E = 8.2e-23) amino acids 1762 to 1850 (89 residues), 63.9 bits, see alignment (E = 6e-22) amino acids 1857 to 1930 (74 residues), 34.4 bits, see alignment (E = 1e-12) PF17803: Cadherin_4" amino acids 561 to 633 (73 residues), 35.7 bits, see alignment (E = 2.5e-12) amino acids 666 to 738 (73 residues), 40.9 bits, see alignment (E = 6e-14) amino acids 771 to 844 (74 residues), 35.4 bits, see alignment (E = 3.2e-12) amino acids 877 to 950 (74 residues), 39 bits, see alignment (E = 2.3e-13) amino acids 983 to 1056 (74 residues), 38.6 bits, see alignment (E = 3.1e-13) amino acids 1089 to 1162 (74 residues), 35.8 bits, see alignment (E = 2.4e-12) amino acids 1194 to 1268 (75 residues), 39.1 bits, see alignment (E = 2.2e-13) amino acids 1301 to 1374 (74 residues), 38.1 bits, see alignment (E = 4.5e-13) amino acids 1407 to 1480 (74 residues), 38 bits, see alignment (E = 4.8e-13) amino acids 1626 to 1698 (73 residues), 50.9 bits, see alignment (E = 4.6e-17) PF17892: Cadherin_5" amino acids 1633 to 1730 (98 residues), 84.7 bits, see alignment (E = 8.4e-28) PF17963: Big_9" amino acids 1634 to 1722 (89 residues), 54.2 bits, see alignment (E = 5.8e-18) amino acids 1854 to 1937 (84 residues), 23.9 bits, see alignment (E = 1.6e-08) PF19077: Big_13" amino acids 1984 to 2078 (95 residues), 38.1 bits, see alignment (E = 4.6e-13)

Best Hits

Predicted SEED Role

"Probable RTX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QA84 at UniProt or InterPro

Protein Sequence (2812 amino acids)

>Shew_0510 putative outer membrane adhesin like proteiin (RefSeq) (Shewanella loihica PV-4)
MSQDKRPNTPPQDESSQARNQAKPQTNSQPASEPEPLTEAQRREREAERLARAQDKAVQK
LKAEEYRDGKTTSRFNQDLVADKPWHAAASASAEPQIEHADLANSADQGPMAQGDQTPSS
TELDDRIASAAQSQQSQSHQSQSQEVQSQEAQTQETQTPEAQANAAQVQNKLAHRAAQTT
GIEEFSGFEKGTAQAPNLTPLAHALTSGGTPPAFQVTLTSSETQAHKPPQPSTGSTQQPS
TQQTGTQPPTTERPTTDPQVSLTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTHENPLHIDS
QQDFQTIKENSVIDTVSDKLAASGDTKDTVTWSVETSKGQYGDLVLNPSTGEWHYHLNNF
DAKTNALFEGEHHNETFTITATDNLGNRVSSVICVAVEGSNDLPVISGVHHASLNELGSV
DKVSGQLIATDPDTGDGVHWAVPHSSGVYGELVIDPDTGVWQYRIDNSSPNTLALHAGQV
ATETFRVTATDSSGQPVSQIVTIEVHGADQRAIIHGIASGSVTEDRDLVAGQLQTSGQLT
VIDPDGGDAHFIATTLQGQYGTLTINDLGHWTYTADNSQSAIQGLKSGESLTETLFVHSI
DGSDQKVTVTINGTDDRAVIGATTGAVTEDKDLYQGLLRVDGALTVTDADHGEEQFVATS
LQGQYGTLTINNLGHWTYTADNSQAAIQGLKSGESLTETLFVHSVDGTEQKVIVTINGTD
DRAVIGGTATGTVTEDKDLYQGQLRVDGALTVTDADHGEAQFVATSLQGQYGTLTINDLG
HWTYIADNSQAPIQGLKSGESLTETLFVHSIDGTEQKVTVTINGTDDKAVIGGASTGAVT
EDKDLYQGQLRVDGALSVTDADHGESQFVATSLQGQYGTLTINELGHWTYTADNSHSAIQ
GLKSGESLTETLFVHSIDGTEQKVTVTINGTDDKAVIGDASTGAVTEDKDLYQGQLRVDG
ALTVTDADHGEAQFVATSLQGQYGTLTINDLGHWSYTADNSQTAIQGLKSGESLTETLFV
HSIDGSEQKVTVTINGTDDKAVIGGTATGIVNEDRDLYQGQLRVDGALTVTDADSGQNQF
IATSLQGQYGTLTINDLGHWTYTANNSQAAIQGLKAGESLTETLFVHSVDGTEQQVTVTI
NGTDDKAVIGGAATASVTEDRDLYQGQLRVDGALTVIDADSGQAQFQATSLQGQFGTLSI
DSNGHWTYTADNDQPAIQGLKSGESLTETLFVRSVDGTEQRVTVTINGTDDKAVIGGPST
GAVTEDRDLDQGQLRVDGALRVTDPDSGQAQFQATSLQGQFGALSIDSNGHWTYTADNSQ
ATIQGLKSGESLTETLFVHSVDGSKQKVTVTINGTDDRAVIGGAATGAVTEDRDLYQGQL
RVDGALSVTDADHGEAQFIATSLQGQYGTLTINDLGHWTYTADNAQPAIQGLKSGKYLSE
TLMVHSVDGTEQPITIKISGQDDAAVITGEDKGNLKEDYYPAGDAHNTLHYTGSLDVHDP
DKGESYFRATHDAQAISDPFGGSLDIEKHGVWQYVVSNNALQHLGKGQFEQVVYRVYSAD
GTSKDITITLEGTNDAPVISATQILPAGQEDTQMRLTPAQLLAHAKDVDDNDAGQLTVAN
LQADHGTITTNPDGSFSFTPEKDYNGAVHFTYDVKDAHGGVTHTGASTTLAAVSDQAQVS
GDTRGELVEDQHPDAHNQIAISGQLNVQDPDAGQAAFQAGTATQVDDPFGGSLHIGADGS
WTYDVDNARLQQLSEHQEVLVTHRVYTLDGTAQDIVIKITGTNDAPKLGVVRLSSTTGHL
TVQDPDNQDSHSFSVAQQTGQFGTLVVDPDTGAYSYHLNQSVAGMHYDKASGQYQGTDTF
EVQVSDNHGGSETKFISFDARVSLTMPTGTGLQPQLHATVTSPSQLVDTKPQQTPTQTIG
NAITLVLSHGSDTGVSDSDGITHDSHPVVEGQTDIPFSLVTLYEQGNKLTSLLSDAQGHY
SVALSGLSEGAHQISASAQAPGSQQTVQATPLALTLDTQTDIAVHSASLNGHGELVVQVY
LPKDSELTQLVISSSGGGQPLVIDPQHHDAIGGSVSHPDHQYINFEHIDLSSLPDGELTI
SVRGQDVAGNQASASSSQFNGLPLSLNTNIPPLTLALTHDTGQSSSDGITTDASLTIGGQ
LAGMRVEYSVDGGQHWQSQFTPVQGHNQLWVRQTDAFGHASPHTQLDFELDNQAPLPQIR
LDAITPDNLVNAVEAGRSIAVTGSVNSEVPGGTPITLAIGQQTYQGQVDNQGHFSVQVPG
SELAGAHEINASLTTTDLAGNQGSATENHQYQVDTQASIDMNPIAGDNMLQAGEQHQALT
ISGTVTNVEEGQRVTVSIGGQQYHANVHNGCWSTQLSAAEVDALPGGSLEIKAMVSDLAG
NQAQMSSPLYVVDHANPIPSMSFITPPTPTGTGAIGSHISGDLIAPPLLQQLTPNAPTTG
AWAIDDGHGHPTLSLRGQYGTLTIDPDTGHVDYVYNQAPTPGDKAAGGTHWAGETTSETH
HDIFHILYHDSHSSNVDVEVNLDITYVHGHSGHNQLSTQLVDMTVTPVTTSPAPPPPPPE
LHDTPQWDDNQDASDDAQVIVIQASEGEAEDKHAADLDEKLVHSQPHELAASGAEPSHTE
ADTRPLAAATLAPVDHYLQMVGLSQQDLAQVESHTKPQPDLETPLMATEHFDADDLTLTP
ADQFDNPLLEEHEKEKPHPSLVDIDDPRDDQHASAHDDDLLHNALNDMHNQF