Protein Info for Shew_0325 in Shewanella loihica PV-4

Annotation: tyrosine recombinase XerC (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 PF02899: Phage_int_SAM_1" amino acids 6 to 87 (82 residues), 66.9 bits, see alignment E=1.6e-22 TIGR02224: tyrosine recombinase XerC" amino acids 7 to 292 (286 residues), 352.3 bits, see alignment E=1.1e-109 PF00589: Phage_integrase" amino acids 109 to 278 (170 residues), 160.5 bits, see alignment E=3.5e-51

Best Hits

Swiss-Prot: 70% identical to XERC_SHESA: Tyrosine recombinase XerC (xerC) from Shewanella sp. (strain ANA-3)

KEGG orthology group: K03733, integrase/recombinase XerC (inferred from 100% identity to slo:Shew_0325)

Predicted SEED Role

"Tyrosine recombinase XerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3Q9P9 at UniProt or InterPro

Protein Sequence (297 amino acids)

>Shew_0325 tyrosine recombinase XerC (RefSeq) (Shewanella loihica PV-4)
MSDDWVQEFVSYLVSERQLSPHTVRNYRFELERVGELLPENFIWAEVSDEQLQAVLNKLH
RKGLGPRSIALTLSALKQFCHYLLQEGYIKKDPCLNLSAPKQQKPLPKNMDLDSVTHLLS
IEGDDALALRDKAIMELFYSSGLRLAELAALDTRDIASGEHQVKVMGKGSKERIVPIGRM
ALSAIDDWLKVRSLLPCEDDALFVTAKGKRLAHRSIQARLNKWGQLQGLNARVHPHKLRH
SFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQHLAKVYDGAHPRAKKRGGNG