Protein Info for Shew_0314 in Shewanella loihica PV-4

Annotation: putative outer membrane adhesin like proteiin (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1553 PF17803: Cadherin_4" amino acids 296 to 379 (84 residues), 36.4 bits, see alignment 1.2e-12 amino acids 417 to 500 (84 residues), 31.5 bits, see alignment 4.3e-11 amino acids 537 to 620 (84 residues), 32.3 bits, see alignment 2.4e-11 amino acids 657 to 740 (84 residues), 32.3 bits, see alignment 2.4e-11 amino acids 777 to 860 (84 residues), 32.3 bits, see alignment 2.4e-11 TIGR01965: VCBS repeat" amino acids 348 to 433 (86 residues), 54 bits, see alignment 2.3e-18 amino acids 462 to 553 (92 residues), 69.3 bits, see alignment 3.9e-23 amino acids 582 to 673 (92 residues), 69.3 bits, see alignment 3.9e-23 amino acids 702 to 793 (92 residues), 68.4 bits, see alignment 7.5e-23 amino acids 822 to 923 (102 residues), 70.1 bits, see alignment 2.1e-23 amino acids 988 to 1038 (51 residues), 27.6 bits, see alignment (E = 3.7e-10) PF17963: Big_9" amino acids 452 to 540 (89 residues), 30.9 bits, see alignment 8.3e-11 amino acids 576 to 660 (85 residues), 31.6 bits, see alignment 5e-11 amino acids 696 to 780 (85 residues), 31.5 bits, see alignment 5.4e-11 amino acids 816 to 900 (85 residues), 31.6 bits, see alignment 5e-11 PF00353: HemolysinCabind" amino acids 1360 to 1394 (35 residues), 20.2 bits, see alignment (E = 9.8e-08) amino acids 1369 to 1403 (35 residues), 29 bits, see alignment (E = 1.7e-10) amino acids 1386 to 1421 (36 residues), 37 bits, see alignment (E = 5.3e-13) amino acids 1414 to 1447 (34 residues), 24.1 bits, see alignment (E = 5.5e-09) TIGR03661: type I secretion C-terminal target domain (VC_A0849 subclass)" amino acids 1462 to 1547 (86 residues), 47.4 bits, see alignment 5.4e-16

Best Hits

KEGG orthology group: None (inferred from 96% identity to slo:Shew_0314)

Predicted SEED Role

"T1SS secreted agglutinin RTX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3Q9N8 at UniProt or InterPro

Protein Sequence (1553 amino acids)

>Shew_0314 putative outer membrane adhesin like proteiin (RefSeq) (Shewanella loihica PV-4)
MIMGASITTQDAVVVNLVGELKVKDEQGNIREVKIGDLIHAGEQLIFSPNAKFNLEYEDG
SSTTQANLMQDTLNQDTTVSQDTGQEQQSDAAPQTNTPVALDPEIAALQAQILAGEDPTQ
GLPETAAGAGTPTNQGDAYFVSVGRTGDETLADAGWDTAGFPLTPDTTVEEVIIPELQPS
APTVSSATFSLFEANLAQGSSPSALLTNFANNIQTAADAGISSLTINGINIISGGQFAGP
IVINTPNGVLTITGFDSASGQFTYDYAFNSSADHSAGDQLQFLFNIELVDNQGDIATGTI
TVNIIDDQPEGFADSNAVTEDTATVATGNVLGNDIQGADSAEVTAVTNSQGTSISLGETN
SIQGQFGVLTLFADGSYSYQLNNGSSAVQSLALGQQITETFNYLLTDSDGDSVLVPLTIT
ITGTNDTPIITSNIEAATGSVLEAGVMDGGNVPEPGSLVTGGTLTAADVDNGASWTWSGV
PQVSDYGTFSINASTGEWSYTLADNALVDALAQGETHEETFLVTVTDEHGAYSTQLVTVT
VTGTNDIPVITSNIEAATGSVLEAGVMDGGNVPEPGSLVTGGTLTAADVDNGASWTWSGV
PQVSDYGTFSINASTGEWSYTLADNALVDALAQGETHEETFLVTVTDEHGAYSTQLVTVT
VTGTNDIPVITSNIEAATGSVLEAGVMDGGNVPEPGSLVTGGTLTAADVDNGASWTWSGV
PQVSDYGTFSINASTGEWSYTLADNALVDSLAQGETHEETFLVTVTDEHGAYSTQLVTVT
VTGTNDIPVITSNIEAATGSVLEAGVMDGGNVPEPGSLVTGGTLTAADVDNGASWTWSGV
PQVSDYGTFSINASTGEWSYTLADNALVDALAQGETHEETFLVTVTDEHGAYSTQLVTVT
VTGTNDIPVLTIDKTSGLVTEDDSDPMLTDTGTLSFTDVDDEYLPEYVGHDLSASYVANS
LMWSGGDITDVLSADQIQALIDGFSVYQDHWDYSILNSLVQFLAANETITLSFDVTVADK
HGAYDTQTVTITINGNNDPIEGEFAKEIWVPASLAEIAIPYLDGYPLGIDVPTDQDYNDV
ITITGLSLSFVDPDETADIGEIWYVDDNTGVLTLYDFDNPVVLSASELGSLVYVPGDNAG
IEDQLDINLTFTVNSGSDSVDGNFVIHTVPANSLGGNTVLIGDGSSPLTSGNDQDAYLTV
SSAFASAINLDPSSGALDLFTDFQKSPFDIPIPNGEIGGQTGIEREEEVSVRLTINGITF
IVIAAANGVTDWFYDANSGLMSAHISYTNILMESDNSITLADYLGANPVDPGDIWTITYL
DNDGGSYQARFVQATFTHELLPDTAVTVTGTDNVDNLIFGTTEGDSLTGANLDDEIYGRE
GNDSIFGLEGDDQLIGGSGDDLIEGGSGNDIILGGLGNDTIDGGIGADILIGGAGSDTID
AGIDSDIDTFVWDVGSDDNSIDTVLNFDISMDKLDLSAILVDEESGVYALDQYLAFNFSG
GNTEISVDANHDGVVDLTIVLNNVDLTNNNTLSDAQIINNLLGNENLVIDTIP