Protein Info for Shew_0245 in Shewanella loihica PV-4

Annotation: molydopterin dinucleotide-binding region (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1012 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF00384: Molybdopterin" amino acids 234 to 671 (438 residues), 36 bits, see alignment E=4.4e-13 PF01568: Molydop_binding" amino acids 886 to 979 (94 residues), 39 bits, see alignment E=7.2e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_0245)

Predicted SEED Role

"Tetrathionate reductase subunit A" in subsystem Tetrathionate respiration

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3Q9G9 at UniProt or InterPro

Protein Sequence (1012 amino acids)

>Shew_0245 molydopterin dinucleotide-binding region (RefSeq) (Shewanella loihica PV-4)
MDRRKFLTQAGLVSAATITGAACSRVDAESEPKKTQDISRFGHPVAAEGGFDAQGKWQKT
AGVRTVYSRCFSCYNICGLRVRVDEKTDRVLKVGGNPYCENNSGSPLPLSTEVKQSFIAL
AGEAGLKNRATTCAKGASCVDSVDDERRVTRVLKRAGKRGGGEWVTISYEQALAEIIEGG
DLFGEGHVDGLRAIRQLDQEVKPGHSEFGSKANQLFATFCAEDYLRGSFYSRFMMQSWGT
VNLGTKHAYCGAAQATGYSLGMAAGFEEWLNDVDWENVEYGLFMGTSPGSSGVSLNRVGR
GLANSRVDRGFKYVCVDPLLRTTVAADTNATWLPVKPGQDAAFSFGVIRTMLEEQWFNKA
HLENPSQKAAEASGELNYTNAGHLVVMDPKHPEYRKFAKAKDFGLGGDEALIIKAGTQTL
ASAESGDKAELFVSKRVTDSRGRKVTLMSSLYLLRAEAQRTSMEEYAKRSGIAVKEMRQV
AKDLAHYGRKACVAGNGGTNSSDGFVMGWIWATLNTLAGSHDAKGGAIYGNGPIGGMEGL
YDLANIEGGVSLDGIVNACRDGAYEASTEYRLKVEQGKNPYPASTPWHEVLPAMNAAEQW
TSHANGDPYSAKVLFNWRNNFLYSAASISQEVVASIADPKRLPLVVGIDCHMNETNRYAD
YLIPDRSMLEEYAADRMWGAHKLGVVAASPVVTPRTEKNEAGEHICMEQLLIDIALKLDL
PGFGKGALASSDGRKVDLLTFEDWHARYLANVAAQCEQLPKVTEEDRLWAGLDYAMKPLK
PRLTAEEAAKVEALLSRGGYYQEDDRYDGDFIKGAGPKCLQIYHQEVAQLRHAYSGEFYP
GTPTLQEHKFWNGDTWESHWPQSEYPLLFSSYKATVRSNYAVAFKRIGEISPTNFVYIHT
DTAKAQGLKDGDQVRIVTANGKPCVGTLQTDVGVAKGAICVSHGFGHSEGFGGDDRIING
ERLAGIANRAGGTAVNQMIPADPTRNGAASMLNDYWTGANCRHGIPVRVEKA