Protein Info for SO4656.2 in Shewanella oneidensis MR-1

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 673 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 24 to 25 (2 residues), see Phobius details amino acids 56 to 77 (22 residues), see Phobius details amino acids 97 to 117 (21 residues), see Phobius details amino acids 131 to 151 (21 residues), see Phobius details amino acids 163 to 182 (20 residues), see Phobius details amino acids 452 to 474 (23 residues), see Phobius details PF05231: MASE1" amino acids 3 to 162 (160 residues), 44.8 bits, see alignment E=3.4e-15 PF03924: CHASE" amino acids 228 to 401 (174 residues), 91.2 bits, see alignment E=2.7e-29 TIGR00229: PAS domain S-box protein" amino acids 509 to 630 (122 residues), 78.4 bits, see alignment E=2.6e-26 amino acids 635 to 671 (37 residues), 27.3 bits, see alignment 1.7e-10 PF00989: PAS" amino acids 512 to 623 (112 residues), 28.6 bits, see alignment E=4.4e-10 PF13426: PAS_9" amino acids 529 to 625 (97 residues), 39.5 bits, see alignment E=2e-13 PF08448: PAS_4" amino acids 531 to 628 (98 residues), 30.8 bits, see alignment E=1e-10 PF08447: PAS_3" amino acids 536 to 615 (80 residues), 25.6 bits, see alignment E=4.2e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_4656.2)

Predicted SEED Role

"Signal transduction histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (673 amino acids)

>SO4656.2 conserved hypothetical protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MGLMIALPPGYSAAIWPAAGVAIASCLLWKGRAPWGGVFIGSLLTNMNIGQELHLGWLPL
IIALGTLLQTIISARIIQYIDPQLTLDKPETVIKSMVSLSASCCIASLFGNAALVLGDTI
TSADVVSSMFNWWMGDFLGAVIFIPLTMLVFDRRAIWRSRRIQTGLPLLVGFLLCIGIYY
YADMNQRQQLQDKFQIQSNAIISSVESFQGTNLQQLVALASLFDNSEKVSENEFIQFGIR
NQLQLDGFRAWAWSPLVTLSDKNSFESATRDELGGAFNIKYLQDGKPNADGWLAPVKYVQ
PLNSSRSVLGLDLNSEPVRAAAIAKVRATLAPVMTSKIQLAEDPNGPGGALLLVPSFDRV
GNIKGFCSAVIDIESIINKVEQVKGLHWRLTDMSADGALLYANSQKKFPSFSGKLHSDKS
GQYYQAHLMLADRHWHIVIYESYAALMGETFSLSLLLLLLAFITCAVVSGMTLISSGERY
RIADKVAEKTMALSKEIARNQAFQATLVESEEKYRNLFDKAPVGHVLKRLEDSQFVAINQ
AFTEITGYTLEELQALEPWDLTPVRYRASEAEQLERLKQTHRYGPYQKHYRHKDGRLVAV
RLNGSLVTAANGEPLILFVVEDITEQERTVARVNLLAQVFQQSGEGITIIDANDIIVDVN
SAFTQITGYSRRR