Protein Info for Dshi_3938 in Dinoroseobacter shibae DFL-12

Annotation: Calcium-binding EF-hand-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 66 to 84 (19 residues), see Phobius details PF13202: EF-hand_5" amino acids 91 to 109 (19 residues), 15.1 bits, see alignment (E = 2.7e-06) amino acids 115 to 134 (20 residues), 16.8 bits, see alignment (E = 7.7e-07) amino acids 144 to 163 (20 residues), 19 bits, see alignment (E = 1.6e-07)

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_3938)

Predicted SEED Role

"FIG01028501: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (202 amino acids)

>Dshi_3938 Calcium-binding EF-hand-containing protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MKRNTLLAAMTLAATALGGAAFADANHGRGGQFGAQSGPGMMQNGGPGMMGNMGGMMDMM
KRMHGNMMGAGMMGAGMGSGMMSPGMAGGMMQMFDTDGDGTTTPEEMRTQLQAKLSEFDS
DGDGSLSITEFEALHSAMIREMMVDRFQHLDADGDGAVTPEEMAAPADRMERMQMMRSNM
ADAPARPGNGQGMGNGSMMQDN