Protein Info for Dshi_3698 in Dinoroseobacter shibae DFL-12

Annotation: integrase family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 508 PF02899: Phage_int_SAM_1" amino acids 222 to 297 (76 residues), 23.1 bits, see alignment E=1.1e-08 PF00589: Phage_integrase" amino acids 325 to 492 (168 residues), 79.4 bits, see alignment E=4.2e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_3698)

Predicted SEED Role

"FIG00616080: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LT64 at UniProt or InterPro

Protein Sequence (508 amino acids)

>Dshi_3698 integrase family protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MNSPSNSQRRARDRADNLALVDTYHADNPGLSQGALSAARHFLKWAQARKVSVRDLDASV
VDSFLRHHCRCGRYSPNQLRSPMYATYTRRFFRYLEDTGIVAIPNDTARLRQHLEAFAKK
LESAGYSEVSRASLLSHAAHFAEWVLQQRVPLTAIGEGTIDQFAWHECRCGEMTKHGNRV
LASHYKNRKRGAHALVRHLIDEGLLPPQAPDDVSAEDPRLISFSEWLRRERGVAPETVRR
YLNEVGRWLDSLGATPEDYDAAAIRSIILDQGEERSQSSVRKTVTVLRAFLRFTIVQGAC
APSLLHAVPSAVRRKLSTVPRTIPTAKIEEILASCRTDTPVEIRDRAILLLLARLALRAG
DIWQLHLSDIDWRTSRLRLHGKGRRGVMMPLPQDVGDALLVYIEDARPVVASNRVFLRVQ
APFTPLRSSAEIAGIVSRVLSRGGFTDLPTGSHVFRHSLASAWLRGGADLDLIGAALRHT
SRDTTAIYAKVDVGMLEEVAQPWPGDAS