Protein Info for Dshi_3429 in Dinoroseobacter shibae DFL-12

Annotation: metal dependent phosphohydrolase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 PF01966: HD" amino acids 58 to 105 (48 residues), 23.6 bits, see alignment E=5.4e-09

Best Hits

Swiss-Prot: 74% identical to Y048_RHOCB: Uncharacterized protein RCAP_rcc00048 (RCAP_rcc00048) from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)

KEGG orthology group: K06952, (no description) (inferred from 100% identity to dsh:Dshi_3429)

Predicted SEED Role

"COG1896: Predicted hydrolases of HD superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LP97 at UniProt or InterPro

Protein Sequence (202 amino acids)

>Dshi_3429 metal dependent phosphohydrolase (RefSeq) (Dinoroseobacter shibae DFL-12)
MAIKMAKPPRAWQRMLSGRRLDLLDPTPMDIEIDDIAHGLAFVARWNGQTWGEYPYSVAE
HSLLVETLYGRLVPDAPAKWRLAALLHDAPEYVIGDMISPVKAAVGPGYGALDERLTAAI
HLRFGLPALLPKTVKAAIKRADRVSAWLEAVKIAGFSESEATKFFGKPKEGVLDGLALHL
RPPVEVRRAYTQRHETLLAQTG