Protein Info for Dshi_3382 in Dinoroseobacter shibae DFL-12

Annotation: protein of unknown function DUF490 (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1084 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF04357: TamB" amino acids 738 to 1084 (347 residues), 166.7 bits, see alignment E=5e-53

Best Hits

KEGG orthology group: K09800, hypothetical protein (inferred from 100% identity to dsh:Dshi_3382)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LNM1 at UniProt or InterPro

Protein Sequence (1084 amino acids)

>Dshi_3382 protein of unknown function DUF490 (RefSeq) (Dinoroseobacter shibae DFL-12)
MKRFLTYLLCLLWLPLGALAQDEEKGGLEGLLERSLSSETFQVTVDGLSGALSSTASIEK
LTFSDPSGPWLEIENAALNWTRTALLRGRVQVAELAAERIRVLRLPAGPEEDPELPSAAA
EPFSFNLPELPVSIEVERFSAGEIFVAAPVIGEEVVATLEGGLRLVDGEGSVNLDLLRTD
VTGTALKLDASFENETEELVVELDAQAREGGLIARKSGIPNAPALDLNVAGRGLLSDFTA
DVNFATADSTRLGGVVQLLAAAAEDPTDGVDRRIIASLSGDVRPLVIADLQSFFGEETKI
DIETVLAGSGAIAVPRLHLTTNQLNLRSTVSLTEALWPEKIALFARLHGEDGEPIALPVP
GSPTELSRAYISFSYDEAGASVWSAVITASDLSQGDISLDTIDLRGAGQLALPSNTEAGA
VSGQLSGGVGGLDLGDPTLQGAVRDEVAFATSFAWRKGEPLDIGGAEIALGDVELNLTGL
FANLAAGVDFDGAISLDAPDLSRFAQLAGQDLNGAVSLDIEGTATLLSGMFDLAIRGNAD
ELRTGIAQADDLLGGTASLAFDGARDENGISIRQASLQTTAIGVEAEGTLGNAAGEISLT
AKLDNLARLVPDLPGPTSFTGTVTQSGETLRVSGQGSGPAGLDLSIDGDVAANFTTADLT
VGGGTSLVIASPFIAPRTATGRLDFDLAVAGPLGLEAVSGTVSLQDARVADPSIGFALEN
LGGSAQLDAGTLGLDFSGRGNRGGRIDLGGSLGLTGSQVADLSVVLDDLRLAIQGFLATE
LDGEIAFAGPLTGGAALTGVINVDQTEIRVPDGAGASGEIDGLRHVRAPEPVRRTLTRAG
LVTVPKPPSGGGGPAIGLDLTVNAPSQIFVRGFGLDAELGGDIRVTGTTADPRPVGEFDL
VRGRLNILGQRLELTEGNIRLSADLIPDIRFVATVTSDDVEVSAIVEGPADDPEVSFESN
PPLPEDEALARLLFNADINSLSPIQALRLANALIAVQNGTGLGLFNSLREEAGLDDLDLV
TDEDGQTSLRLGKYISDDVYTNVDVNADGETEIILNIDLTDSLTARGTAGTDDSAIGLFF
ERDY