Protein Info for Dshi_3364 in Dinoroseobacter shibae DFL-12

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 778 PF02120: Flg_hook" amino acids 655 to 732 (78 residues), 58 bits, see alignment E=3.3e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_3364)

Predicted SEED Role

"Flagellar hook-length control protein FliK" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LNK3 at UniProt or InterPro

Protein Sequence (778 amino acids)

>Dshi_3364 hypothetical protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MPEADRVIGAKGVRGPEEGPTQDRQPSFLETMRTGDRAGAKEAWSPPTSATQRGETEAVA
PQRTRETVGEGPSNMLRDAQSVVSETDLVQSDQPLRLKGAEIPTVQSPSEPLGPIKQDGR
VADTQERSDGLSPLILQKNLEVPIKVATSLEASPMAPEQPFRTEAVLSATSSRNALTALN
TSAQTPASISADPQDTATPPPQQAKTQQEIGQIAPKAGDQSSTFRIMGETFLGPFVPKRG
GMIAMDSPSTFGPIATQAPAQQSVKSDDTSRSETVDVTSTDKKQIAMGASTEGEGTNTPV
QTEFKVGAISSPKAPDTPLSPGEASSGSERSSLPLSELITGLSPTAKNGSSESERLVQNS
GTVIEQGSPSERPSAIANPEITSVPVQASLQSTSQISQAASLVLDNPPKIAQILDPKRDS
VDLSRTTQPDTDGIARAGPAAAAGAMRPEATDPAADMGPDLKLQVRHWSSGPTDPDVAPR
TTATDARPPGNSPSMTLPVNVAPPAVAALPAPAIPGTGAGGVPSSEPKTTPQTSNLNIGP
GIQAAQPPAPQQVVEHDRKSTSSEAPEPPKRAKNGSHAAKLPEAPTSQVAMAIAPPAGQT
SSEALSGELSLLGETDGESRFDRGERASERVIPGQTNARTAAIAASIGANLQANMPKVTG
ETTEILLDPEELGRVRMTLSGAENGGIVMLQVERPETLELMRRNIEQMRAELVEAGWENV
EFSFGQENSPDQHKEAESDPSGWTPQEATVSAAPERLSAIEQRTAALKAGLNGLDIRL