Protein Info for Dshi_3154 in Dinoroseobacter shibae DFL-12

Annotation: TRAP transporter, transmembrane protein, putative (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 182 transmembrane" amino acids 14 to 37 (24 residues), see Phobius details amino acids 50 to 68 (19 residues), see Phobius details amino acids 89 to 107 (19 residues), see Phobius details amino acids 137 to 160 (24 residues), see Phobius details PF04290: DctQ" amino acids 28 to 154 (127 residues), 63 bits, see alignment E=1.4e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_3154)

Predicted SEED Role

"TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 7"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LLX8 at UniProt or InterPro

Protein Sequence (182 amino acids)

>Dshi_3154 TRAP transporter, transmembrane protein, putative (RefSeq) (Dinoroseobacter shibae DFL-12)
MEESLLHILRRLNRGIALATGVVLMGCAAIVLADIVLRQMGSSFGGTDEISGYVMAIATS
WGMAFTLLELGHVRIDILRGRAGQRARAFFDLFSMLVLTGTVTLIAYKCWPVVARSLAND
SRANTPLETPLAWVQIPWFAGWVWFAIVAWLTFVAAAMLVMKGRFETADEAIGCFGEEDL
AK