Protein Info for Dshi_2816 in Dinoroseobacter shibae DFL-12

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 571 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 43 to 61 (19 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 100 to 119 (20 residues), see Phobius details amino acids 139 to 166 (28 residues), see Phobius details amino acids 178 to 197 (20 residues), see Phobius details amino acids 208 to 230 (23 residues), see Phobius details amino acids 239 to 263 (25 residues), see Phobius details amino acids 275 to 300 (26 residues), see Phobius details amino acids 312 to 333 (22 residues), see Phobius details amino acids 345 to 365 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_2816)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LJ54 at UniProt or InterPro

Protein Sequence (571 amino acids)

>Dshi_2816 hypothetical protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MEPKLDQTAFRATLGLLGLVTGLALWSLDTFVITQLGAPRLELAISAAALGFFSATLMMS
GPMLIGRAMAWACLMATLPAALLLWASFRYVSVEALADDPIVLLAFAILLTVPLPFLIAA
DRGMPRDYPTLFNESWRLVIRAAAAAVFLGVFWGVYFICSLLLSLVGVTLLDRLVDQAPF
VFGLSGLVIGLALAVLYEMRRYLSPLLLLRLLQLLLVPVTAVVVVFVVRVPLEGLDQVFS
GLSAAATLLAMTFGLATLVTSALDCEPSEAGLTWLLRWTVQLACCLMPVLAGLGAYAVWL
RVAQYGWTPERVAAACICAVALTYALLYFWAVVRRGNWDPRIRQGNIYAALIGIALAAAS
LSPLLNPQRIAAQSQLALFSAGQTDATQLPVRDMARDWGVAGQAALETLRAQADRDLQIL
LDDALRESATPVALETPEEQRAALARLLPLMPAGASWPEPLWDALDADQIATWLAACRAG
PDSCVAVIGESAPDLPGDEAIVLLVQGARFVSATMVGLDAAGEPVNYVTRRQTSDEAREL
VRATRQGDYTLEVPRRRGLVIGATRLFPSGD