Protein Info for Dshi_2693 in Dinoroseobacter shibae DFL-12

Annotation: protein of unknown function DUF606 (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 137 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 48 (20 residues), see Phobius details amino acids 61 to 80 (20 residues), see Phobius details amino acids 87 to 109 (23 residues), see Phobius details amino acids 118 to 134 (17 residues), see Phobius details PF04657: DMT_YdcZ" amino acids 1 to 133 (133 residues), 125.5 bits, see alignment E=9.5e-41

Best Hits

KEGG orthology group: K09936, hypothetical protein (inferred from 100% identity to dsh:Dshi_2693)

Predicted SEED Role

"Integral membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LII5 at UniProt or InterPro

Protein Sequence (137 amino acids)

>Dshi_2693 protein of unknown function DUF606 (RefSeq) (Dinoroseobacter shibae DFL-12)
MLLAGIGIPVLAALNARLGSQIGAPATAAFILFLVALCATTVVMLATGRQGFDGLAAQPR
HLFLGGVLVAFYVLSITYVAPSFGVGNAVFFVLLGQLASAAVIDHFGLFGARQTPLETTR
ALGIAAMALGVYLTQKA