Protein Info for Dshi_2628 in Dinoroseobacter shibae DFL-12

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 transmembrane" amino acids 21 to 47 (27 residues), see Phobius details amino acids 68 to 95 (28 residues), see Phobius details amino acids 126 to 146 (21 residues), see Phobius details amino acids 152 to 171 (20 residues), see Phobius details amino acids 191 to 218 (28 residues), see Phobius details PF07264: EI24" amino acids 7 to 212 (206 residues), 102.5 bits, see alignment E=1.7e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_2628)

Predicted SEED Role

"Arginine/ornithine antiporter ArcD" in subsystem Arginine Deiminase Pathway or Arginine and Ornithine Degradation or Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LI27 at UniProt or InterPro

Protein Sequence (236 amino acids)

>Dshi_2628 hypothetical protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MIVTIYTRALGQLSDPAFRRVLLIGIGATVVLLVAIAWVFVTLLGWLVPDALTLPFVGEI
TWLDDLASGLGILSMLGLSVFLMVPVASAFTSLFLEDIADAVEARHYPGLPPAPKVSFAD
GLRDTFGFLGVLVVANLAALVLYLFFVPLAPLIFWGLNGFLLGREYFQVTAMRRLGRQGA
AQMRKRHIGKIWLAGVPMAMVLSLPLVNLVIPVVGAAAFTHLYHTLAGSERGKDFT