Protein Info for Dshi_1962 in Dinoroseobacter shibae DFL-12

Annotation: Beta-ketoacyl synthase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1631 PF00109: ketoacyl-synt" amino acids 14 to 296 (283 residues), 181.9 bits, see alignment E=5.4e-57 PF02801: Ketoacyl-synt_C" amino acids 304 to 419 (116 residues), 118.5 bits, see alignment 5.1e-38 PF16197: KAsynt_C_assoc" amino acids 424 to 511 (88 residues), 39.6 bits, see alignment 1.8e-13 PF00698: Acyl_transf_1" amino acids 583 to 895 (313 residues), 79.7 bits, see alignment E=8.5e-26 PF14765: PS-DH" amino acids 1225 to 1354 (130 residues), 26.7 bits, see alignment E=1.2e-09 PF01648: ACPS" amino acids 1517 to 1602 (86 residues), 56.5 bits, see alignment 8e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_1962)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LP20 at UniProt or InterPro

Protein Sequence (1631 amino acids)

>Dshi_1962 Beta-ketoacyl synthase (RefSeq) (Dinoroseobacter shibae DFL-12)
MTADGAHTRHADNEPIAIVGIASIYPEAPDTATYWRNITDKVDAVADAPADWCADLFFDP
ESADNDRIYTKRGGFLRDLAVFDPLRHGVMPTSIDGGEPDQFLALQVAADAVEDAGFAAR
PVPGERVAVILGRGTYINRGFTSVVQHGIMVDRFLSILKKLHPDTDAEELAEVKAQLKAS
LPPFNAEMAPALVPNLVTGRISNRLDFKGANYIVDAACASSLIAMDRGVADLRAGRCDMA
VVGGVHASTPAPIYQIFCQLEALSRKGSIKPFSANADGTLLGEGVGLMCIKRLSDAEAAG
DRIYALVRGVGVASDGKGLGILAPRIEGETLALQRAYEDAGVDPATVGLIEAHGTATALG
DATEVEALVGLMGTRDSDAPSCALGSVKSMIGHCLPASGSAGIIKTALALYHKTLPPTLL
DEANPELGIEGSPLYLNTETRPWIHGLDTPRRAGVNAFGFGGINAHTVLEEYRGGAEPAP
NLTRSSELLVAGAPDASGLSARLEALKTALSGDMPPAEVARVENAAPCPGPWRAAIVARD
AGDAMAKIDKILGRIASGKDRLRDRKGAYLNAAPLAATGKVAFMFPGEGSQHLGMLREIM
LHYPRMRQWFDLVDGAFAGHGRNLLPSQVIFPPPGTAEEGGALWRMDIGPEAIFAANQSV
AALYESIGLRPDMLVGHSTGEYSALFAAGVTRREDPAVLQAEMRALNAEYEAMAAEGLIA
EGALVALGAVDGAALEDKLAGRDDVYLAMDNCPNQKVVAAFSDAGRDYALSLAPALGGFD
ELLPFSRAYHSPAFAPFSARLEGFLAGMQVAAPERPVYSCLSTAPFPDSPDAIRKLTADQ
WSGRVRFVETVERMYADGARVFVECGPRNNLSAFVNDILRGRDHVAVAVDTPSLQGLDQL
HHMAAQLVVEGVTLDLGALAAPVRAVAKPAGPSRPQVLKMGVQPMDIASVPKRAQSAPSK
APPAPKPAPAAPPPAASQTRPTANSPAAPTPPKMPVTVAAAPRPQPAPAAPPAEAEAVVD
AYFDTLEGFLASETEIMAAYLGTVPGQADAAPTPMPTPQTQAPRRFPMLGAVTPAPDGRS
LTARIEIDPARAPYLRDHSFGHGISQRDPELTGLPVVPLTFSMEALAEAAAALRPDLVVT
GMREVRASRWFALDRPPLVVEAAAELREEGPVTVVRVRIRAADGPALRPTLIEADVTLAQ
ARPEAPLAQPQSYGALRDAPWSLADVYGKIMFHGPKLQAVEAMDVVGAGGVEGTLIGLPH
DALYAGVADPGFETDAITLDAVGQLVGVWSAEMLPEAFHIFPFRVEALEIFRDRLAPGER
ARCRATIDLVGADEMRADIDVVSADGRLQCRIAGWWDKRFNLPERFFRARLDPPRNPLSA
PIVLPGGAPLPEGCALQLCDEIGDDLLDGSGGIWAKVLAGLVLSRAERAEFAAMDGATDK
RRWEWLRGRAAAKDAARAVLGRALAPADIPLVVPGEDAGPVIDPTLPPAWGPAPLISIAH
KGARALGLAADPRRYAGVGVDLEEIAPRTPAFLQTAFTPAERASIMALPEGQPRDTAATR
YWCAKEAVGKSFGLGLAQALDRFEVQGDGTDAPPVIVRDLSTHTDIAVTAMAELAPGLIA
AVVLRPQDAGN