Protein Info for Dshi_1354 in Dinoroseobacter shibae DFL-12

Annotation: binding-protein-dependent transport systems inner membrane component (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 transmembrane" amino acids 23 to 50 (28 residues), see Phobius details amino acids 197 to 219 (23 residues), see Phobius details amino acids 231 to 251 (21 residues), see Phobius details amino acids 281 to 304 (24 residues), see Phobius details amino acids 328 to 350 (23 residues), see Phobius details amino acids 385 to 409 (25 residues), see Phobius details PF00528: BPD_transp_1" amino acids 209 to 410 (202 residues), 55.3 bits, see alignment E=3.6e-19

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 100% identity to dsh:Dshi_1354)

Predicted SEED Role

"Inner membrane ABC transporter permease protein YcjO" in subsystem Maltose and Maltodextrin Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LIY2 at UniProt or InterPro

Protein Sequence (416 amino acids)

>Dshi_1354 binding-protein-dependent transport systems inner membrane component (RefSeq) (Dinoroseobacter shibae DFL-12)
MTDTPTPTPPTGRGALHRREARLAWGLLLPTVISVSLVVILPLLAIFWISFKPVGLADLR
PTAPVVRESLRGSGEDLRIEYRLRNSSQDKEIRGVTLTDTLPDTVVVGEGLPEFCTLSGR
ALRCDYGDISGGFNERFALPITLAPGADEDAVEDVVEGSLPRITGEGDSILTNAEFTLEN
FARIFDADEFWGVLGVTMFYTVFGTLGALLFGLFAALLLNKSFRGQGILRGLYLFPYVAP
VIAVAFTWVTLFDPFSGSANALLIQMGVTNEAINFFGQRPLALIMVTVFEIWRYFPLSFL
FILARMQSIDTDMYEAADMDGASPFQKFWYLSLPMLVGILSVLFLLRFIWTFNKFDDIFL
LTGGNAGTRTLTVNVYEQAFAVSNIGAGAAVAVVIFGCLLLFSVLFFRFISREEGL