Protein Info for Dshi_1179 in Dinoroseobacter shibae DFL-12

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1105 transmembrane" amino acids 25 to 46 (22 residues), see Phobius details PF13116: YhdP" amino acids 374 to 807 (434 residues), 51.6 bits, see alignment E=2e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_1179)

Predicted SEED Role

"Large exoproteins involved in heme utilization or adhesion"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LHX4 at UniProt or InterPro

Protein Sequence (1105 amino acids)

>Dshi_1179 hypothetical protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MSDPTVPDPETQHTPAQDSRPRSGLVVLMAAALLLAGIGGLAAFALRGSVAVPEPLVQRA
QAVLSRALDGRGDADLGGIELYLTEEGRPRVSLTGLTLRAADSVDSVTLPRLDVVLARRA
LLRGEVRPESVRLEGARLRLSRDADGLLSLAFQSGGALTRVPSLPALIAEIEAVFDIPAL
QDLRRVTLSDLTLDLADSRLRQVVTLSGGEAVLDVSETALSLALALDLPGIGTGASLRFT
TRKGDPETRVSLRMDAVPAQVLARQSPVLAPLGVFAGPVSARFAGGLRPDGRLSALEGQL
ALGVGALALGGKAAPLAVSEATATWRYAPDQRRMFIEDIVLDTDRLRLTGSAHGDIADGA
ASGSAPGGFPDLLLHADLSEIWVDPGARLPGPTTLARVMLDARWRTAARRLEIGQLYAED
AVTEARLHGAGRLELPAGAPPFLQLEVQTTGLPSARVLDFWPVSGRGEKAGAWLRENLTG
GILDNVTATLMATPGERPKLAASFDLRDAAARVLPQFPTLMAGSAHGTLFEHEFNIRVSE
GEMVVPDRGPVDLAGSSFQILDTRIRGGDARLHLSARGAVPTALALLDSPPISLLDRVAL
PPDRLSGTVAARAGLTVPLRKGRKVDLDTLWVDASLSDLRFAEVAPGRDFAAPDLDLTIT
DRTVTLAGTGALQDVPLEVVLARAFDTPAGDGTEISGTAQLTAQGLAALGVVLPEGTVSG
QGAVDYRLRLRPDAPPRLELTGDLAGLGLSIPALNWRKPASAPGTLIASLRLGPVPAVDA
FRLSAAGLEAEGRITLREGGGGLDRMELDRLSVGDWLTGQAVLTGQGPGVAPTVALTGGR
LDLRNLPRGDAGGDGARAPLQIALDTVQVTDDLRLTGVRGAVGRSGGVIGGTLAAQVNGG
APVSLTLARAASGRQAVQVQASDAGAVLRDAGVLRTLRGGTLDMRLEVLDDPRILEGQVR
ITDGNIVETPGAVQLLSAISIVGLLDQMADGGIAFSEIATGLAISPGGITLREGRATGPS
LGITFEGVVMPARDRIDLQGVVSPFYALNALPGSLFARRGEGLVGVSYRLAGSPSAPQVQ
VNPLSLLTPGLFRDLFRRDPPDLTQ