Protein Info for Dshi_1145 in Dinoroseobacter shibae DFL-12

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 233 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 198 to 217 (20 residues), see Phobius details PF02104: SURF1" amino acids 15 to 206 (192 residues), 138.3 bits, see alignment E=2.2e-44

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_1145)

Predicted SEED Role

"Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion" in subsystem Biogenesis of cytochrome c oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LHU0 at UniProt or InterPro

Protein Sequence (233 amino acids)

>Dshi_1145 hypothetical protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MLRLGIPLAFGLIGTAILLALGNWQVNRLGEKEAFLAAIDARITEAPVDLPATIDPEADR
FRAVEVRGRYTGQEIDVLASAKGVGAAYRVISAFETDDGRRVLIDRGFLPVAQRAAPRTF
PEARLQGNLHWPDEVDSFTPEPDTGDNTWFARDVPALAAALDTEPVLIVLRATSEPDPFA
TPYPLDTSGIPNDHLEYAVTWFSLAAVWFGMTLYFLWRMRRPDRGASRATDEQ