Protein Info for Dshi_0627 in Dinoroseobacter shibae DFL-12

Annotation: ABC transporter related (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 251 PF00005: ABC_tran" amino acids 32 to 172 (141 residues), 108.5 bits, see alignment E=4.4e-35 PF13304: AAA_21" amino acids 139 to 202 (64 residues), 32.2 bits, see alignment E=1.1e-11

Best Hits

Swiss-Prot: 40% identical to CYSA_BURCE: Sulfate/thiosulfate import ATP-binding protein CysA (Fragment) (cysA) from Burkholderia cepacia

KEGG orthology group: K06857, putative tungstate transport system ATP-binding protein (inferred from 100% identity to dsh:Dshi_0627)

Predicted SEED Role

"ABC-type tungstate transport system, ATP-binding protein" in subsystem ABC transporter tungstate (TC 3.A.1.6.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LQ87 at UniProt or InterPro

Protein Sequence (251 amino acids)

>Dshi_0627 ABC transporter related (RefSeq) (Dinoroseobacter shibae DFL-12)
MRDFHTHPELELGDKLLEARDIVLMRGGKRLLDGVDLSLPAGRRTVIMGANGAGKSLLLR
VLHGLIAPDAGQVLWHGAPLSAEARQAQSMVLQRPVLLRRSVLGNLRFALSVRGIRGKER
AAREAEALDRAGLSEFARRPARVLSGGEQQRLAVARALSTAPRMLLLDEPTASLDPAATR
QIESQINAAHGAGVTVVMVTHDHGQARRMADDILFLHRGRVAEAGPAQQVLTAPRSAAVA
AWLDGRFYDGP