Protein Info for Dshi_0624 in Dinoroseobacter shibae DFL-12
Annotation: Ferric reductase domain protein transmembrane component domain (RefSeq)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 48% identical to MSRQ_OCHA4: Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ (msrQ) from Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / JCM 21032 / NBRC 15819 / NCTC 12168)
KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_0624)Predicted SEED Role
"FIG001196: Membrane protein YedZ"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A8LPP7 at UniProt or InterPro
Protein Sequence (202 amino acids)
>Dshi_0624 Ferric reductase domain protein transmembrane component domain (RefSeq) (Dinoroseobacter shibae DFL-12) MVDGLNRAARKVPNWLFYVLGPLPAMWLLWQGIQGGLGVDPVKVIEHELGLIALQLLIAG LAITPLRRFAGLNLIKWRRPIGVLAFSYVALHLATWVLLDMQLYWEQMLKDIAKRPYITI GMVAFVLLVPLAWTSNNRSVRSMGAAAWSKLHRLVYPAVLLGAVHFVMVQKVWEAESLLY LALTVGLLATRIKLPRRDTARA