Protein Info for Dshi_0507 in Dinoroseobacter shibae DFL-12

Annotation: MRP-like protein (ATP/GTP-binding protein) (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 PF10609: ParA" amino acids 86 to 327 (242 residues), 330.3 bits, see alignment E=1.8e-102 PF09140: MipZ" amino acids 88 to 211 (124 residues), 32.2 bits, see alignment E=1.8e-11 PF13614: AAA_31" amino acids 88 to 126 (39 residues), 35.6 bits, see alignment 2.4e-12 PF01656: CbiA" amino acids 90 to 308 (219 residues), 48.5 bits, see alignment E=2.2e-16

Best Hits

KEGG orthology group: K03593, ATP-binding protein involved in chromosome partitioning (inferred from 100% identity to dsh:Dshi_0507)

Predicted SEED Role

"Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LNU7 at UniProt or InterPro

Protein Sequence (348 amino acids)

>Dshi_0507 MRP-like protein (ATP/GTP-binding protein) (RefSeq) (Dinoroseobacter shibae DFL-12)
MPDGTPFLGAPQVSGPVLSGGRISLSIMTTAAGAASLGETRSKAEAALRAIPGAETAFVT
LTNDAAAAPPVLKQPNAAKPAVLAEVAHVVAVASGKGGVGKSTTAVNLALGLRANGLKVG
ILDADIHGPSIPTLLALHGQPRMGKDRRLLPMQSNGISAMSMGMMVDAETAMVWRGPMVM
SAITQMLAEVNWGALDVLIVDMPPGTGDAQLAIAQGTKLAGAVIVSTPQDLALIDARRGI
AMFKKVDVPILGLIENMAHFTCNDCGKQHALFGTGGAEAEAKRLNVPFLGAVPLTMDLRA
ASDSGQPIVVRDPEGPLGKLYVEMAGALWANLVASSSKYQSPRKLQGA