Protein Info for Dshi_0470 in Dinoroseobacter shibae DFL-12

Annotation: Sulphur oxidation protein SoxZ (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 signal peptide" amino acids 1 to 42 (42 residues), see Phobius details TIGR04557: quinoprotein dehydrogenase-associated SoxYZ-like carrier" amino acids 55 to 281 (227 residues), 284.7 bits, see alignment E=2.1e-89 PF13501: SoxY" amino acids 60 to 166 (107 residues), 100.7 bits, see alignment E=6e-33 PF08770: SoxZ" amino acids 201 to 283 (83 residues), 86.3 bits, see alignment E=9.2e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_0470)

Predicted SEED Role

"FIG00440919: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LNR0 at UniProt or InterPro

Protein Sequence (290 amino acids)

>Dshi_0470 Sulphur oxidation protein SoxZ (RefSeq) (Dinoroseobacter shibae DFL-12)
MSFCMFLWHVCQAWTREEEIMAQKLVCAVAVATLTAGWAWAGETVQNPLTASATWEDLRE
DVLGDVALMSADGLLSMDAPYRAHDAATVPIQLKQTDPSTRIHAATVVVDENPAPVAGLF
TFGEGMGTLDFELRVRVDQYSNVRVIAETADGFHMTGRYVKASGGCSAPATKDAAAALAN
MGQMKLKSFDSDVQMSMPRREAQIMIRHPNYSGLQRDQITQLFIPAHFIDHLEVWQGDEM
LFSMEGGISISENPVFRFGYDDNGAEDLTVKATDTDGNSFEARLPKKVTS