Protein Info for Dshi_0463 in Dinoroseobacter shibae DFL-12

Annotation: transposase IS3/IS911 family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 88 PF01527: HTH_Tnp_1" amino acids 2 to 71 (70 residues), 87.6 bits, see alignment E=8e-29 PF13384: HTH_23" amino acids 12 to 47 (36 residues), 26.7 bits, see alignment E=5.7e-10 PF13518: HTH_28" amino acids 14 to 45 (32 residues), 26.6 bits, see alignment E=7.8e-10

Best Hits

Swiss-Prot: 62% identical to YIA3_RHISP: Insertion element ISR1 uncharacterized 10 kDa protein A3 from Rhizobium sp.

KEGG orthology group: None (inferred from 98% identity to rde:RD1_3450)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LNE3 at UniProt or InterPro

Protein Sequence (88 amino acids)

>Dshi_0463 transposase IS3/IS911 family protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MKRSRFSEEQIIGILKEHQAGLGAKELCRKYGISDATFYKWRSKYGGMEVSDARRLKTLE
SENAKLKKMLAEQMMDVATLKEMLGKNF