Protein Info for Dshi_0379 in Dinoroseobacter shibae DFL-12

Annotation: inner-membrane translocator (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 358 transmembrane" amino acids 27 to 44 (18 residues), see Phobius details amino acids 50 to 69 (20 residues), see Phobius details amino acids 76 to 95 (20 residues), see Phobius details amino acids 101 to 123 (23 residues), see Phobius details amino acids 130 to 148 (19 residues), see Phobius details amino acids 183 to 202 (20 residues), see Phobius details amino acids 235 to 258 (24 residues), see Phobius details amino acids 271 to 302 (32 residues), see Phobius details amino acids 314 to 335 (22 residues), see Phobius details PF02653: BPD_transp_2" amino acids 51 to 333 (283 residues), 118.1 bits, see alignment E=2e-38

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 100% identity to dsh:Dshi_0379)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LMY4 at UniProt or InterPro

Protein Sequence (358 amino acids)

>Dshi_0379 inner-membrane translocator (RefSeq) (Dinoroseobacter shibae DFL-12)
MFYREAGDFKTSYVADSQTFPIAFDRMRYYLVLAVAVGIIPFVINDYWASAVMVPFLIWA
IAAIGLNILTGYCGQVSLGTGGFMAVGAYACYKLMTAFPDLNIAICVLLGGVITAAVGVL
FGLPSLRIKGFYLAVATLAAQFFLVWLFNKVPWFYNYSASGQINAPERTMFGYAITGPNA
DAAPKYLFCLAFLFVLAWLARNLTRGTIGRSWMAIRDMDIAAEIIGVNPLKAKLTAFAVS
SFFVGVAGALFFSVYLGAVEVGEAFGINQSFLVLFMIIIGGLGSIFGSLAGAAFIVLLPV
LLKNVMVGSLGWDTAIAAHFEFVVLGGLIIFFLIVEPHGLARLWQLAKEKLRLWPFPH