Protein Info for Dshi_0317 in Dinoroseobacter shibae DFL-12

Annotation: ATP12 ATPase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 234 PF07542: ATP12" amino acids 7 to 124 (118 residues), 132.3 bits, see alignment E=5.3e-43

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_0317)

Predicted SEED Role

"Chaperone required for the assembly of the mitochondrial F1-ATPase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LM89 at UniProt or InterPro

Protein Sequence (234 amino acids)

>Dshi_0317 ATP12 ATPase (RefSeq) (Dinoroseobacter shibae DFL-12)
MSGWAAKRFWKETDIVEAGTGFEVRLDGRSVRTPLKTLLVVPSRGFAERIAAEWDAQDET
VNPQSMPFTRAANAALDKVTPQHAEVAEMLSAYGGTDLLCYRATGPDTLCARQAESWDPL
LDWAAERYGARLRVTAGVLPVDQDPDSLARLSQAVAAFTPFQLTGFHDLVAISGSLVLGL
AVAEGRMSAEAGFAASRIDEEWQISQWGEDEEEAERIAVKRADYLRAKEIFDLS