Protein Info for Dshi_0158 in Dinoroseobacter shibae DFL-12

Annotation: cobaltochelatase, CobN subunit (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1235 TIGR02257: cobaltochelatase, CobN subunit" amino acids 1 to 1231 (1231 residues), 1627.1 bits, see alignment E=0 PF02514: CobN-Mg_chel" amino acids 138 to 1218 (1081 residues), 1237 bits, see alignment E=0

Best Hits

Predicted SEED Role

"CobN component of cobalt chelatase involved in B12 biosynthesis" in subsystem Coenzyme B12 biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LKR4 at UniProt or InterPro

Protein Sequence (1235 amino acids)

>Dshi_0158 cobaltochelatase, CobN subunit (RefSeq) (Dinoroseobacter shibae DFL-12)
MHLLAATPGSIDDGQEPVDLGQTPADLVVISAADTELAGLSAARAEMDAPPRMRLANMMH
LRHPMSVDLHIDDCASKARLVVARVLGGMGYWRYGAEQYATRVAAAGGHVVLLPGDDKPD
PELRALSTLRGAEYDALWSYLVEGGPENAVHFLAYARHLLDPAQPAPPAASPLLRAGVYW
PGAGLSNLDTVRAQWTEGAPVVPLIFYRALVQGAGLHPINRMVKALRARGLNPLPVFVAS
LKDPVSAATLEHLFEAAPPDVILNCTSFAVGLPGTERLSQGASNPLAQPAARGAPVFQVV
LAGSSLEAWEGGTAGLSARDIAMNVALPEVDGRVLTRAVSFKGEAFFDDATECAIATYQA
QGDRIGFVADLAANWARLRRTPPGERRTALILANYPNKDGRLANGVGLDTPEATARMLQL
LRDAGYGVDAPPADGAALMDRILAGPTNWLTDRAERTGGVRLPLDTYRAHYAALPLALRS
QIEDRWGAPEDDPFCADGAFALSVIPFGNVVVGIQPARGYNIDPTETYHAPDLVPPHNYL
AFYIWLRHVQGAHALVHMGKHGNLEWLPGKSVALSETCFPEAVFGPLPHVYPFIVNDPGE
GTQAKRRAQAVIIDHLTPPLTRAETYGPLRDLEGLVDEYYEAAGVDPRRIAELRREILSL
TSVTGLDKDAGFTGEEDNDLAKLDAYLCELKEAQIRGGLHIFGTAPTGRLARDLAIALTR
LPRGDGTGGDASLLRALAGDLDLGFDPLDCDMAAAWEGPRPDMLAAIAKDSWRSTGDTVE
RLELLAAACVEGAPAPGPQSATVLAEIAADVLPTIAACGPAEGAGLLTALDGQFVAPAPS
GAPTRGRLDVLPTGRNFYSVDSRAIPTPTAWKLGWKSANLLIERHLQDQGDWPRTLLLTA
WGTANMRTGGDDIAQCLALMGVKPRWDAANRRVTGFEVLPLSVLGRPRVDVTLRVSGFFR
DAFPQQIALVDSAARAVMALDEPEADNPAAARARAEGHTARVYGSKPGAYGAGLQAMIDE
RLWADKADLAEAYIGWSSYAYGAEAEGTPDRDGFTARLSQADAIVQNQDNREHDLLDSDD
YYQFEGGAAAAIATLQGAERPIYHNDHSRPERPVIRTLDEEIGRVVRSRVVNPKWIAGVK
RHGYKGAFEIAATVDYMFAFAATTGAVKSHHFDLVHAAMLEDDDTREFIAEANPAALREI
AERLSEAIDRGLWQPRSNSAKARLAQLGADTQAAE