Protein Info for Dshi_0100 in Dinoroseobacter shibae DFL-12

Annotation: transposase, putative (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 627 PF09039: HTH_Tnp_Mu_2" amino acids 110 to 202 (93 residues), 35.1 bits, see alignment E=1.2e-12 PF02914: DDE_2" amino acids 218 to 417 (200 residues), 55.2 bits, see alignment E=8.6e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_0100)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LKK6 at UniProt or InterPro

Protein Sequence (627 amino acids)

>Dshi_0100 transposase, putative (RefSeq) (Dinoroseobacter shibae DFL-12)
MRREDIPLEPYKNSYLVAVQDLPDCLRFSLLNAELEHLHLSPGTYDAAAHEAFFEASPSR
RDRAERRAAVARVLVALGPGVRWSDRLRIVHEKFGAKGLSKPCLREILRRVEGIDPINFA
PALLDEYKGTTKRAEFTDEAWRFFLTQIRDAAPEWPLAEAWRRTRDAGRELGWKVPPYIT
VYRRWMELSEVQKLHARQGTAETAKNLSIPVQRDKTSLLALDVVSLDGREIDVFVDWGDG
KAVRPVMLVLVDVSSNAVLDFELAPSENATATVRLIKRACANHGIFDKLYTDNGSAFAGH
KVAGGTPHRFRNGVAKGVQPMGICEVLGIDVQFALPGNAQAKIAERLYAIMSRSDDDGPD
FKGAHTGHKPGARPNSETNPIPVDECKALLARGVRRLNREEGRRNQGAQGRSYDQVLRDG
LTKRAELGRPVRYPTKDQLYRAGLIWTPATVDRNTQIKVDHWTYGGPETQEALAPYRRGG
AKNLKGGTKILLARDPDDLSAPAIAYDAERNFICDQIEPVRRGDYNSSDGIREAARNRKA
ARDAARKAEEANAYLEDAEYLRAKAALDAASREDDMPPPAPGKVVGARFGGPLKAAKPKP
ETDNEAEVLKQFDRVTGFDPVRVLRGQ