Protein Info for BT4573 in Bacteroides thetaiotaomicron VPI-5482

Annotation: conserved hypothetical protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 220 PF23894: LD_SV2" amino acids 55 to 109 (55 residues), 29.4 bits, see alignment E=1.6e-10 PF00805: Pentapeptide" amino acids 57 to 89 (33 residues), 15.5 bits, see alignment 2.1e-06 amino acids 75 to 113 (39 residues), 20.3 bits, see alignment 6.7e-08 amino acids 142 to 175 (34 residues), 23.8 bits, see alignment 5.1e-09 PF13599: Pentapeptide_4" amino acids 76 to 142 (67 residues), 52.4 bits, see alignment E=9.1e-18 amino acids 96 to 172 (77 residues), 66 bits, see alignment E=5.3e-22 amino acids 136 to 200 (65 residues), 39.4 bits, see alignment E=1e-13 PF13576: Pentapeptide_3" amino acids 142 to 178 (37 residues), 28.2 bits, see alignment 3.6e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_4573)

Predicted SEED Role

"Quinolone resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q89Z04 at UniProt or InterPro

Protein Sequence (220 amino acids)

>BT4573 conserved hypothetical protein (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MIKRNAAKPVRVAPPMMEEQEVSTSTLQELLEKEETVSNLIFSKGREEGISKSYKSFKNC
TFRNQTFSECKFRSSQLADIRFENCDLSNISFAESSLYRVEFIACKLLGTNLSETTMNHV
LLHDCNASYINLAMSKMNQVRFSHCHFRNGSFNDCRFSSVAFDSCDLVEADFSHAPLRGI
DLRTSRIGGITLNISDLKGAVITSLQAMDLLPLLGVIIED