Protein Info for BT4085 in Bacteroides thetaiotaomicron VPI-5482

Annotation: putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 618 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details PF14322: SusD-like_3" amino acids 44 to 249 (206 residues), 58.7 bits, see alignment E=9.9e-20 PF07980: SusD_RagB" amino acids 338 to 617 (280 residues), 212 bits, see alignment E=1.6e-66

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_4085)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8A0D6 at UniProt or InterPro

Protein Sequence (618 amino acids)

>BT4085 putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MNITVFRVYQLNLLTAISMYMKSLFYLFLSIVGAWLFSSCSDDFLGETETTDLDQATVFA
DSTYTADFLNQIYVDIGFDIQHNRYKDQYNDHGGLQTSCDEAAYKASTGLTTDVMFATGT
VNPVTISEDDVWRIAYRNIRRVNVFFKYADGSRMAEVAKEEYKAEARFLRAWYYAMLLRH
YGGVALIGDDVYETVEEAIKERNSYADCVEYIVDEANKAAETLPVERSGNKFGRVTRGAC
KALISRVRLYAASKLFNGSDFAPADFPKELLGYPTYDKERWKIAVDAALDVIKMKQYDLY
IRNEDENNEAYPGWGYYAQLLPADYYGKVGTEVYCGTIFEKKAGASIDTNRWFAPPSTGG
NGIGGYVYHDLAELFPMADGTPTKDSPDYDPTNPANKRDPRFMFTVTYDGCIMKSNMQDT
EINISVGTQQDAIYRGTPTGYYTHKFLKFGSMANQMLYGGSQARPLMRYTEILLNYAEAA
NEYYGPDHKDVLGDQEISPYIVLRKIRECAGIEPGEDGTYGIENNMSQADMTEAIRLERR
LDLAFEGHRFFDVRRWMIAEDTDNRMMHGFEITRNGERKTGRIIDTRQHTFRKAMYFYPI
PYKETVKSPDLLQNPYYE