Protein Info for BT3705 in Bacteroides thetaiotaomicron VPI-5482

Name: SusR
Annotation: regulatory protein SusR (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 582 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 54 to 72 (19 residues), see Phobius details amino acids 380 to 402 (23 residues), see Phobius details PF28559: TPR_SusR" amino acids 88 to 358 (271 residues), 299.9 bits, see alignment E=2e-93 PF19904: SusR_C" amino acids 428 to 581 (154 residues), 201.3 bits, see alignment E=8.7e-64

Best Hits

KEGG orthology group: None (inferred from 100% identity to bth:BT_3705)

Predicted SEED Role

"Regulatory protein SusR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8A1F9 at UniProt or InterPro

Protein Sequence (582 amino acids)

>BT3705 regulatory protein SusR (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MLVLNRLLIISFLSLLPLSKNTSENENCYGDIFRFYYYNHYICHILKKHLMRNLTYYLLF
LLFVYPLSLSAKHTDINKAALKKLDDIISKKETYQIRREKDITDLKVQLAHSTDPARNYE
LYASLFGAYLHYQADSALHYINRQMEILPQLNRPDLEYEIVINRATVMGVMGMYIEAMEQ
LEKIDPKKLNEWTLLSYYQTYRACYGWLADYTTNKTEKEKYLKKTDLYRDSIIAAMPPEE
NKTIVMAERCIVTGKADTAIGMLNDALKDMEDERQKVYIYYTLSEAYSMKKDVEKEVYYL
ILTAIADLESSVREYASLQKLAHLMYELGDIDRAYKYLSCSMEDAVACNARLRFMEVTEF
FPIIDKAYKLKEERERAVSRAMLISVSLLSLFLLIAIFYLYRWMKKISVMRRNLSLANKQ
MSAVNKELEQTGKIKEVYIARYLDRCVNYLDKLETYRRSLAKLAMSSRIDDLFKAIKSEQ
FIRDERNEFYNEFDKSFLKLFPHFITSFNNLLVEEARVYPKSDELLTTELRIFALIRLGV
VDSNKIAHFLGYSLATIYNYRSRMRNKAAGDKDRFEQDVMNL