Protein Info for BT3557 in Bacteroides thetaiotaomicron VPI-5482

Annotation: putative transposase (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 452 transmembrane" amino acids 425 to 441 (17 residues), see Phobius details PF05598: DUF772" amino acids 60 to 124 (65 residues), 30.2 bits, see alignment E=3.8e-11 PF13586: DDE_Tnp_1_2" amino acids 348 to 423 (76 residues), 34 bits, see alignment E=3.5e-12

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_3558)

Predicted SEED Role

"Transposase, IS4"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8A1V1 at UniProt or InterPro

Protein Sequence (452 amino acids)

>BT3557 putative transposase (NCBI ptt file) (Bacteroides thetaiotaomicron VPI-5482)
MAKIVNVSEIHPTLGFTEFDILEKYRKSFNESELGKLHSVFPFECMAKAAGLSDRRLGRR
NRFSPSAKIALMVLKAYTGFSDRQLVEHLNGNIHYQIFCGIMIPPSLPITNFKIVSAIRN
EIASRLDIDSFQELLASHWKPYLDNLHVCMTDATCYESHMRFPTDMKLLWESLEWLYRHI
CRHCRELGIRRPRNKYRNVAESYLSYCKKRKRRASRTRMLKRRMIKLLEKLLSQRDGIHS
EYGALLRYTQDYHKRLSIIRKVLVQEKEMFEGRKVSDRIVSIDRHYVRPIVRGKETKSVE
FGAKVNNIQIDGISFIEHLSFKAFNEGIRLKDCIRMQQKLMNVRVRCVAADSIYANNANR
KFCTKYGISTSFVRKGRAAKDEPLRKVLRSELSKERATRLEGSFGTQKQHYSLSRIKARN
RKTEILWIFFGIHTANAILMIEKIRNKAAKAA